PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58540.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 185aa    MW: 21621 Da    PI: 5.2937
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58540.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.77.2e-1583132554
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                 +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L ++l++ ++
  Dca58540.1  83 RKQRRMISNRESARRSRMRKQRHLDELWSQVVLLRNENHQLVDKLNHVTE 132
                 689******************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.3E-1579143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.46181132IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.6E-1283155No hitNo description
SuperFamilySSF579592.18E-1383132No hitNo description
PfamPF001702.7E-1283132IPR004827Basic-leucine zipper domain
CDDcd147023.49E-1984135No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MQSNEVAGYQ YLVSSSQNQY PYYSGMTETT NTFPFQISKY SNMLYNLQIG PQPHELTPQA  60
PCFSSNSTSD EADEQHISII NERKQRRMIS NRESARRSRM RKQRHLDELW SQVVLLRNEN  120
HQLVDKLNHV TECHDRAIQE NIQLKEETSE LRQMITDMQL SSPYSTLGDL EEVANAMYLR  180
DESPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694542.11e-101PREDICTED: basic leucine zipper 43
SwissprotQ9FMC21e-45BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0K9RIT17e-83A0A0K9RIT1_SPIOL; Uncharacterized protein
STRINGXP_010694542.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-51basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]