PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58547.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28318.4 Da    PI: 8.8714
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58547.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.31.6e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ie+   rqvtfskRr g+lKKA+EL vLCdaevaviifs tg+l+++ss
  Dca58547.1  9 KKIEDANSRQVTFSKRRSGLLKKAHELAVLCDAEVAVIIFSATGRLFDFSS 59
                68***********************************************96 PP
2K-box60.37.8e-21871721499
       K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +++  +e++ Lk+ei  Lq  q +l+G++L+ Lslk+LqqLe+qL ++l ++++kK++ll+eq+e ++ +e+++  en++Lr++++
  Dca58547.1  87 ENEDMKEIDYLKNEITRLQLGQMRLQGKELSGLSLKDLQQLEKQLSEGLLSVKAKKDQLLMEQLELSRLQEQRALLENESLRRQVA 172
                 456678*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.10E-42277No hitNo description
SuperFamilySSF554552.49E-31278IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.66887177IPR002487Transcription factor, K-box
PfamPF014862.7E-1590171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGKIEIKK IEDANSRQVT FSKRRSGLLK KAHELAVLCD AEVAVIIFSA TGRLFDFSSS  60
SMRRTLLRYQ NARESSEVVA GKPNMDENED MKEIDYLKNE ITRLQLGQMR LQGKELSGLS  120
LKDLQQLEKQ LSEGLLSVKA KKDQLLMEQL ELSRLQEQRA LLENESLRRQ VAKLQGCMTP  180
SEKSEQMYLE YYPIERKVSP QKLATFGADA ACSSEFEKTD SDVTLHLGPP CSKTRKRKVA  240
ESESASPTVS P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-24192189Myocyte-specific enhancer factor 2B
1tqe_Q9e-24192189Myocyte-specific enhancer factor 2B
1tqe_R9e-24192189Myocyte-specific enhancer factor 2B
1tqe_S9e-24192189Myocyte-specific enhancer factor 2B
6c9l_A9e-24192189Myocyte-specific enhancer factor 2B
6c9l_B9e-24192189Myocyte-specific enhancer factor 2B
6c9l_C9e-24192189Myocyte-specific enhancer factor 2B
6c9l_D9e-24192189Myocyte-specific enhancer factor 2B
6c9l_E9e-24192189Myocyte-specific enhancer factor 2B
6c9l_F9e-24192189Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021736404.11e-133agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392952e-73AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A0K9QY751e-127A0A0K9QY75_SPIOL; Uncharacterized protein
STRINGXP_010694750.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-73AGAMOUS-like 15