PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca5860.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 658aa MW: 72664 Da PI: 4.6632

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca5860.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	9.3e-10	509	552	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +W++ + e ++++++q+G++ + I + ++ g+tl+q++s+++k Dca5860.1 509 RAKWSKKDTEMFYQGIRQFGTD-LSMIQQLFP-GLTLEQIRSKYRK 552 569*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.3E-20	503	580	No hit	No description
SMART	SM00717	4.1E-6	508	556	IPR001005	SANT/Myb domain
CDD	cd00167	5.78E-5	511	552	No hit	No description
SuperFamily	SSF46689	4.04E-8	511	558	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MLLTLSLFLS SSPMIHTQKL LLSCSMTAPA ASKFKPKGKA RAKKGPSKAA NSVIVKDTVE 60 KAPSSDLPSS VQADDIVKEK SEAPTSSSHT ETKDIVDSST TTTEPPETHA QDVLNIHHEA 120 TPVIPDVSVA SYSPFTTQPD SEDFQINVEQ LEAGDFSSLD AVETMIEAGG AAGKRTKLTP 180 KPKAQDRGND KVETLSPDDQ LVTDDSVHVG GLDSFHKSSD TDQDVGFSLN PTADQSQSVI 240 FEDTDTLMSS EILEQIGNEG NLDGLNSSGD LPNEGHVLSG AEVDEDMSEF VEGTTDTVHV 300 NSESPTKAQD DLTSNREENI PGDHIEEEKP KKKRGRKPKN AASENDKSGR KPKNAASENN 360 KPGRKQKNAA SENDKPTRKR KKVAEKPVQP VVEPPKKKFP HATRRKRCVD KSLLEVAEEE 420 LDLHKLPIKD LILLAEHRER EKKKQVPSVQ PAPTIERINN FQSEDVPYDD DTFGFNQDRE 480 IDENPSTSGV QTDTGYYYNY GTHRKKQARA KWSKKDTEMF YQGIRQFGTD LSMIQQLFPG 540 LTLEQIRSKY RKEQKQNPMM MDDAQMTRAT DNSCFELVIK TLEAAREYDS SDDDLAHLTG 600 KEGKAEDTPE THAAPEEGAN SEQNPKDEAD KETVEIPEVG SPVKSNVDDD DWDDYTGL

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MLLTLSLFLS SSPMIHTQKL LLSCSMTAPA ASKFKPKGKA RAKKGPSKAA NSVIVKDTVE  60
KAPSSDLPSS VQADDIVKEK SEAPTSSSHT ETKDIVDSST TTTEPPETHA QDVLNIHHEA  120
TPVIPDVSVA SYSPFTTQPD SEDFQINVEQ LEAGDFSSLD AVETMIEAGG AAGKRTKLTP  180
KPKAQDRGND KVETLSPDDQ LVTDDSVHVG GLDSFHKSSD TDQDVGFSLN PTADQSQSVI  240
FEDTDTLMSS EILEQIGNEG NLDGLNSSGD LPNEGHVLSG AEVDEDMSEF VEGTTDTVHV  300
NSESPTKAQD DLTSNREENI PGDHIEEEKP KKKRGRKPKN AASENDKSGR KPKNAASENN  360
KPGRKQKNAA SENDKPTRKR KKVAEKPVQP VVEPPKKKFP HATRRKRCVD KSLLEVAEEE  420
LDLHKLPIKD LILLAEHRER EKKKQVPSVQ PAPTIERINN FQSEDVPYDD DTFGFNQDRE  480
IDENPSTSGV QTDTGYYYNY GTHRKKQARA KWSKKDTEMF YQGIRQFGTD LSMIQQLFPG  540
LTLEQIRSKY RKEQKQNPMM MDDAQMTRAT DNSCFELVIK TLEAAREYDS SDDDLAHLTG  600
KEGKAEDTPE THAAPEEGAN SEQNPKDEAD KETVEIPEVG SPVKSNVDDD DWDDYTGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	377	381	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-31	MYB_related family protein