PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5861.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 181aa    MW: 20470.6 Da    PI: 7.8092
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5861.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.58e-153492563
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
               ++ +r+++NRe+ArrsRqRK++ ++ L+  v++L + N++  ++++  +++  k+++e+
  Dca5861.1 34 RKRKRMISNRESARRSRQRKQKHLDDLTAQVANLRKSNHQILNTINVTTQHFLKVEAEN 92
               5789*****************************************99999998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.5E-173094IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-103284No hitNo description
PROSITE profilePS5021710.1623295IPR004827Basic-leucine zipper domain
PfamPF001705.9E-123485IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-123485No hitNo description
CDDcd147021.59E-193585No hitNo description
PROSITE patternPS0003603752IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTSSGGITSS GTTSSLNQTS SSEEEMQIQI IDERKRKRMI SNRESARRSR QRKQKHLDDL  60
TAQVANLRKS NHQILNTINV TTQHFLKVEA ENSVIRAQML ELSNRLQSLN HINEVLASTS  120
NNNNHHNNNN SSITNNNDYL GIYGDQMFPF TDDTNPWNSV AAACMMNQPI MAASAHDMFQ  180
Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13354RKRKRMISNRESARRSRQRKQK
24652RRSRQRK
34653RRSRQRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671337.11e-64PREDICTED: bZIP transcription factor 11
TrEMBLA0A0J8FKP23e-63A0A0J8FKP2_BETVU; Uncharacterized protein
STRINGXP_010671337.14e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-39basic leucine-zipper 44