PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58649.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NZZ/SPL

Protein Properties

Length: 394aa MW: 43835.7 Da PI: 8.1593

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58649.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	23.8	7.8e-08	5	109	2	101
NOZZLE 2 atslffmstdqnsvrnpnellrntrlvvnssgeirtetkksrgrkpgsktaqqkqkkpt...lrgmgvaklerfiieeek....kklvvatvgdtssva 93 +tslff s+ +n +n n+ n n+ + ++++k kp s+ + + qk pt rgmgvak e i +e +l+++ + + a Dca58649.1 5 TTSLFFKSSSNNNNNNNNNNNNNNINNNNNRSNNQSDAKPDPTPKPRSRRGGRAQKGPTkppQRGMGVAKTELEIKRKEGlsptDRLIASKMAAA---A 100 69****9998888777766666666566667777788888888988888888886663337*****9987776664111123333322222...2 PP NOZZLE 94 aisn.tatr 101 a+ n +tr Dca58649.1 101 AADNmMTTR 109 222202333 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MIPTTTSLFF KSSSNNNNNN NNNNNNNNIN NNNNRSNNQS DAKPDPTPKP RSRRGGRAQK 60 GPTKPPQRGM GVAKTELEIK RKEGLSPTDR LIASKMAAAA AADNMMTTRN AGLPVTLPGY 120 PVHPYPVPVP VPHYYFPGQQ SDPSSLRAAY PIVPDPHLEL PPMPNLALHD NHAALSYKKK 180 RMNGDEEENE GMLVGFGKGK EKLYCGDNYG VNYGGFNGNY PNNSSYYHHF GVNNNAVFPV 240 SYDFTPSAAN DQAMMMTTHQ MMRMPNSSVT EYGFFPEMSN KGYYYHQNNN NNNNNNNNNN 300 NNNNDNNNNR DDNTNNNNNN RDINNNYYYN NDQLDLKLGC SETISYASSP SSSLTTATYN 360 NNNNNNNTTV ITTITTTTTT ADTFLDLSLK LSNY

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MIPTTTSLFF KSSSNNNNNN NNNNNNNNIN NNNNRSNNQS DAKPDPTPKP RSRRGGRAQK  60
GPTKPPQRGM GVAKTELEIK RKEGLSPTDR LIASKMAAAA AADNMMTTRN AGLPVTLPGY  120
PVHPYPVPVP VPHYYFPGQQ SDPSSLRAAY PIVPDPHLEL PPMPNLALHD NHAALSYKKK  180
RMNGDEEENE GMLVGFGKGK EKLYCGDNYG VNYGGFNGNY PNNSSYYHHF GVNNNAVFPV  240
SYDFTPSAAN DQAMMMTTHQ MMRMPNSSVT EYGFFPEMSN KGYYYHQNNN NNNNNNNNNN  300
NNNNDNNNNR DDNTNNNNNN RDINNNYYYN NDQLDLKLGC SETISYASSP SSSLTTATYN  360
NNNNNNNTTV ITTITTTTTT ADTFLDLSLK LSNY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-