PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58729.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 408aa    MW: 44624.6 Da    PI: 6.7409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58729.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32192250159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vk+s+fprsYYrCt+a C vkk+vers +d+ +v++tYeg+H+h+
  Dca58729.1 192 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSCDDTAIVVTTYEGHHTHP 250
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-33177252IPR003657WRKY domain
SuperFamilySSF1182902.35E-28184252IPR003657WRKY domain
PROSITE profilePS5081131.181187252IPR003657WRKY domain
SMARTSM007743.4E-37192251IPR003657WRKY domain
PfamPF031061.3E-25193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MNNNPTNNFF DGITINNNNN MNNNNKNIFL DQQQHQQQPC GGGGGGGCYF DDDDILGISS  60
DFENSSYIFD LLPPPTLPPL TTTTTTTTTT TTTTAPTTCF YRGADPSPPT GESSEVVNNS  120
ASISSSSSDG LKTTSSKDQE LQSGRAADAD GDDGDGDHHD KSTKQSKPKK KKQKREKEPR  180
VAFMTRSEVD HLDDGYRWRK YGQKAVKNSP FPRSYYRCTT AACGVKKRVE RSCDDTAIVV  240
TTYEGHHTHP CPIMTRGGLG FGMTGFSIPN LSPLDQCSTA STSASSFGGS GSTLSSSSLL  300
LPRHPQLFHH NLYQQNPPQF HTYFLNNPNP SSLNFTTSTG GLSTSNSITT TTTLMTSNST  360
DYHHRQQSLQ RQGREPCSVS FHQQTRDDGL LQDIVPSQMR NNDQATQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-27182252777Probable WRKY transcription factor 4
2lex_A7e-27182252777Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021774274.15e-81probable WRKY transcription factor 23
TrEMBLA0A0K9QEI84e-68A0A0K9QEI8_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.14e-39WRKY DNA-binding protein 48