PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58773.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 330aa    MW: 36890.5 Da    PI: 9.6223
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58773.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.8e-104285245
                XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Dca58773.1 42 KDQKILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 85
                567888*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.3E-93688No hitNo description
SMARTSM003381.4E-841104IPR004827Basic-leucine zipper domain
PfamPF001705.5E-74385IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.2894387IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.56E-74588No hitNo description
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
PfamPF141441.0E-32127202IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADGSPRTDI STDADTDERS KRFDRRELVG PVGSDSSDRS TKDQKILRRL AQNREAARKS  60
RLRKKAYVQQ LESSRLKLTQ LEQELQRARQ QGIFISSTGD QAHSTGGNGA MAFDVEYSRW  120
LEEQNRQINE LRAAINARAG DTELRVIVDA VMSHYEDIFR LKANAAKNDV FHLLSGMWKT  180
PAERCFLWLG GFRSSELLKL LSNQLEPLTE QQVAALQNLQ DSSQQAEDAL SQGMDALQQS  240
LAETLASGSL GSSGSSGNVA NYMGQMAMAM GKLGTLEGFI RQADNLRQQT LQQMHRILTT  300
KQSARALLAI HDYFSRLRAL SSLWLARPKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670518.10.0PREDICTED: transcription factor TGA6 isoform X1
RefseqXP_010670519.10.0PREDICTED: transcription factor TGA6 isoform X2
RefseqXP_021858498.10.0transcription factor TGA2 isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0K9RI250.0A0A0K9RI25_SPIOL; Uncharacterized protein
STRINGXP_010670518.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-164TGACG motif-binding factor 6