PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58800.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LSD
Protein Properties Length: 241aa    MW: 27356.4 Da    PI: 4.2483
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58800.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.96.8e-13152176125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+Cr lLsYP G+++VRC++C tV
  Dca58800.1 152 CGSCRRLLSYPQGSKHVRCSCCLTV 176
                 ***********************98 PP
2zf-LSD127.26.3e-09190212123
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCd 23 
                 C  C +lL+YP+GA sVRC +C 
  Dca58800.1 190 CADCAVLLMYPFGAQSVRCCSCC 212
                 99****************87774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.3E-15149179IPR005735Zinc finger, LSD1-type
PfamPF069434.9E-10152176IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.2E-6187212IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-6190214IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEGDGGDLDE VLESHVDENN EEADKDQLQI PQVQEQHDQQ QPVEQKQKLD DEVMEGPPPG  60
WDSLPPPLRR TPPPQQDEAN ERDLYENNEE TQEEQLQIPQ VQRQHDQQLV EQKQEDDDEV  120
MEGPPPGWDS LPPPPPLPRR TPPQQEMGQM ICGSCRRLLS YPQGSKHVRC SCCLTVNYVL  180
EEHQVGQVKC ADCAVLLMYP FGAQSVRCCS CCSVISIGDY NRRPPLSVQQ SRACRPFKVG  240
H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726448.12e-59proline-, glutamic acid- and leucine-rich protein 1-like
TrEMBLA0A0K9RGW58e-55A0A0K9RGW5_SPIOL; Uncharacterized protein
STRINGXP_010686668.11e-53(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-27lsd one like 2