PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58815.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 256aa    MW: 27780.6 Da    PI: 5.377
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58815.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1574.1e-1886142362
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                 ++kr rr+++NRe+A+rsR+RK+a+++eLe+ v++L +eN +L    ++l++  ++lk+ 
  Dca58815.1  86 DVKRRRRMASNRESAQRSRKRKQAQLQELEQQVDQLGGENVTLF---KQLTDATQQLKDA 142
                 579****************************************9...8899999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.4E-1483140No hitNo description
SMARTSM003388.2E-1984148IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.61186149IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.97E-1287139No hitNo description
PfamPF001705.5E-1587141IPR004827Basic-leucine zipper domain
CDDcd147025.19E-1289139No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKEDLINGIS NCGGFDQNIL WYQNLTTNKQ PTVSTIDSQS SICAGSPTST LKPSKAGDNN  60
QGSGSSEDDD GENELGQCEL SDDGVDVKRR RRMASNRESA QRSRKRKQAQ LQELEQQVDQ  120
LGGENVTLFK QLTDATQQLK DASTNNRVLK SDVEALRAKV RLAEDMVTRG SLSSSLNHLI  180
QTQLSSHQVM NTRDLTRVAN NVSPTIMVRG QDTSVGATYS RQNSGIVDDN LGHVLNVNAT  240
GGLGSDNVNC VSGIWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189106RRRMASNRESAQRSRKRK
2102107SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283059.21e-80PREDICTED: basic leucine zipper 9
SwissprotQ9FUD37e-60BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A438C2303e-79A0A438C230_VITVI; Basic leucine zipper 9
TrEMBLA0A438K8Z94e-79A0A438K8Z9_VITVI; Basic leucine zipper 9
TrEMBLF6H3C43e-79F6H3C4_VITVI; Uncharacterized protein
STRINGVIT_04s0008g02750.t015e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-53basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]