PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58918.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 243aa    MW: 27127.6 Da    PI: 10.0822
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58918.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-175094147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W++eE+e++++a k++G   Wk+I +++g ++t+ q++s+ qk+
       Dca58918.1 50 RENWSKEEHEKFLEALKLHGRA-WKKIEEHVG-TKTAVQIRSHAQKF 94
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-164498IPR009057Homeodomain-like
PROSITE profilePS5129420.6854599IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-104794IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-154897IPR006447Myb domain, plants
SMARTSM007172.0E-134997IPR001005SANT/Myb domain
PfamPF002499.7E-155093IPR001005SANT/Myb domain
CDDcd001674.02E-115295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTSQEQTNDP QSNSSFTLES TISTDVCTQV VTKEGHVPKI RKPYTISKQR ENWSKEEHEK  60
FLEALKLHGR AWKKIEEHVG TKTAVQIRSH AQKFFFKVVR ETSSTSVSST VVEIPPPRPK  120
KKPSRPYPRK FVLPTEKEIS KDLPTRSTSP SSSIYENRSP MSVMSPLASE NLASENSAAR  180
NGSPSPTSFA EAVNSAELSP SNDTEPRDIS MKLERFSSLD SVNKPESAPR KIIKLFGQDV  240
VVP
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675239.18e-70PREDICTED: protein REVEILLE 2 isoform X1
SwissprotF4K5X64e-43RVE2_ARATH; Protein REVEILLE 2
TrEMBLA0A0K9R4833e-63A0A0K9R483_SPIOL; Uncharacterized protein
STRINGXP_010675239.13e-69(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.14e-33MYB_related family protein
Publications ? help Back to Top
  1. Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V
    A weed reaches new heights down under
    Plant Cell, 1999. 11(10): p. 1817-26
    [PMID:10521514]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]