PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58921.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 313aa MW: 36334.1 Da PI: 7.5482

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58921.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182	1.5e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s + Dca58921.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWELPcKsILPSKDMEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QV 102 79**************************.99***********6434556888*********************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLv+y+grap+g++t Wvmheyrl Dca58921.1 103 RAVGMKKTLVYYRGRAPHGHRTGWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-59	4	138	IPR003441	NAC domain
PROSITE profile	PS51005	55.102	6	159	IPR003441	NAC domain
Pfam	PF02365	8.8E-31	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWE LPCKSILPSK 60 DMEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QVRAVGMKKT LVYYRGRAPH 120 GHRTGWVMHE YRLDERECEI ANGFQNHGEE YGTIPVEDPS ILRGQHVTDE YKTDNDFHEF 180 VNDSDPSKSF INDDDDIDNF SDTPNFDVFE EVEVNHNLYI SSKWLAETRF HQVQPTKTVQ 240 VYLQRAKLSQ NTPITTFKGD QCHTKPSAVC RIVRFARNCK VDGMLSNLFV ARVWPSMTVV 300 LALCTLWANQ ITL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	1	135	12	144	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	1	135	12	144	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	1	135	12	144	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	1	135	12	144	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	1	135	15	147	NAC domain-containing protein 19
3swm_B	2e-52	1	135	15	147	NAC domain-containing protein 19
3swm_C	2e-52	1	135	15	147	NAC domain-containing protein 19
3swm_D	2e-52	1	135	15	147	NAC domain-containing protein 19
3swp_A	2e-52	1	135	15	147	NAC domain-containing protein 19
3swp_B	2e-52	1	135	15	147	NAC domain-containing protein 19
3swp_C	2e-52	1	135	15	147	NAC domain-containing protein 19
3swp_D	2e-52	1	135	15	147	NAC domain-containing protein 19
4dul_A	2e-52	1	135	12	144	NAC domain-containing protein 19
4dul_B	2e-52	1	135	12	144	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694967.1	3e-97	PREDICTED: NAC domain-containing protein 86-like
STRING	XP_010694967.1	1e-96	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	8e-88	NAC domain containing protein 28