PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58948.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 496aa MW: 56275 Da PI: 7.8377

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58948.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.8e-12	426	477	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 r+rW++ E++ l ++v+++G g+Wk+I +gRt+ ++k++w++ Dca58948.1 426 RKRWSPLEEDTLREGVHKYGRGSWKAILMDEDfaqvfQGRTEVDLKDKWRNM 477 89***********************99999999999**********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.116	421	482	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-13	423	483	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-8	425	480	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-10	426	477	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-13	426	479	IPR009057	Homeodomain-like
CDD	cd11660	5.93E-16	427	479	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MLLRRIEIET SNGFVSENIL ELIEIIEELD HEEAINSSNL MKDAYCLVAV DCTVRFLEEN 60 HEENSKYMEM VDSVWNNRVC KSERLSSDAS KRWFSDIEAA VENSEVYKKI WLINTRNEAL 120 KAVKMYLKEA WDCLGPPFLN SMATKWSNES SKFYSGVMFS DPEKSGASIR RKHVAVKSRS 180 DRGVKFSDVD EDAMKKAGDA TAETVEAEKA TPKVKGPNNG TRSNTKKPLL ADHLSDGVQT 240 AQNSSSTGPC SDNSALEAEQ MTPKNVERRK VARVKRSRTS KTKELHTAAS DPLPEALSVT 300 KNLDTVTQNQ TKPDTPMVPE AERLQKGQEC KQNTETDIRN DAETKMDTLK GSSETRGENY 360 WTQKSVRKRS LMDPNGRSYT LEWDDDIENV NLRSPSSPRL VNPKAIPNSS PLKISENGNS 420 HKRRARKRWS PLEEDTLREG VHKYGRGSWK AILMDEDFAQ VFQGRTEVDL KDKWRNMTKY 480 TWWDPSTTTK GTKTSL

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MLLRRIEIET SNGFVSENIL ELIEIIEELD HEEAINSSNL MKDAYCLVAV DCTVRFLEEN  60
HEENSKYMEM VDSVWNNRVC KSERLSSDAS KRWFSDIEAA VENSEVYKKI WLINTRNEAL  120
KAVKMYLKEA WDCLGPPFLN SMATKWSNES SKFYSGVMFS DPEKSGASIR RKHVAVKSRS  180
DRGVKFSDVD EDAMKKAGDA TAETVEAEKA TPKVKGPNNG TRSNTKKPLL ADHLSDGVQT  240
AQNSSSTGPC SDNSALEAEQ MTPKNVERRK VARVKRSRTS KTKELHTAAS DPLPEALSVT  300
KNLDTVTQNQ TKPDTPMVPE AERLQKGQEC KQNTETDIRN DAETKMDTLK GSSETRGENY  360
WTQKSVRKRS LMDPNGRSYT LEWDDDIENV NLRSPSSPRL VNPKAIPNSS PLKISENGNS  420
HKRRARKRWS PLEEDTLREG VHKYGRGSWK AILMDEDFAQ VFQGRTEVDL KDKWRNMTKY  480
TWWDPSTTTK GTKTSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	3e-13	TRF-like 5