PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59067.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 320aa    MW: 37109 Da    PI: 8.5975
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59067.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.97.9e-1995202291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....................tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                 f + YA  +GF+ r  +++  k+n+ i ++++ C+k+g+re++++                     ++k++r+++ tr+gCka++++k   d+ +++++
  Dca59067.1  95 FCKIYALACGFEYRLGTQRMFKDNT-IRRKDLLCNKQGFRESKRNClsvssetqesseiaapknrkKQKKERNTKITRVGCKAMIRIKFL-DKMYVIER 191
                 7788**************9996666.***************998889*****************9888889999**************99.9******* PP

        FAR1  81 leleHnHelap 91 
                 +++ HnH+l++
  Dca59067.1 192 FKEAHNHKLCS 202
                 *********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1695201IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEEEQQQEQQ HQEELVEGSD SMTDSDISAN VNEVTNQNDV PVTPTVPTEV YESNTTPILP  60
QYTPNGSEEW IRTIEKEFTP TVGKKFYTVL DAVDFCKIYA LACGFEYRLG TQRMFKDNTI  120
RRKDLLCNKQ GFRESKRNCL SVSSETQESS EIAAPKNRKK QKKERNTKIT RVGCKAMIRI  180
KFLDKMYVIE RFKEAHNHKL CSTKHRLFSK HYENLSLYHK QMILNNSKVN IGPTKTFRIC  240
KEFANGYENV GASLLDFKNF QRDVKCFIGE KDAEMFVNNL HKLGETRKGF YFAYDVDAGQ  300
NLCRVFWADA VARRNYSVSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-15FAR1-related sequence 5