PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca5911.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 222aa MW: 24393.4 Da PI: 7.0578

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca5911.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	32	79	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++sLq Dca5911.1 32 SHSLAERVRREKISKKMGTLQALVPGC----DKVTGKALMLDEIINYVQSLQ 79 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-16	26	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-10	26	83	No hit	No description
PROSITE profile	PS50888	14.85	28	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-16	28	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	32	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-9	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MKKEEKKDKD GEEEAPKGYI HVRARRGQAT DSHSLAERVR REKISKKMGT LQALVPGCDK 60 VTGKALMLDE IINYVQSLQN QVEFLSMKLA SVDPMVYTFG LMDHDSILFR PTLQGLSNNM 120 ALPNNRLIES TGGNTSGSTS PSQAFGTANS CLASPATSST LSPTFPITRV DTSVYLPQTE 180 HKPIFSPFQD AGGSYWGINE DDKQSNIVNQ FGLSANNFYS LH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716081.1	2e-80	transcription factor bHLH137-like
TrEMBL	A0A0K9Q9N1	6e-75	A0A0K9Q9N1_SPIOL; Uncharacterized protein
STRING	XP_010678329.1	3e-77	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-47	bHLH family protein