PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59120.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 250aa    MW: 27062.7 Da    PI: 7.2881
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59120.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.83e-274107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +l+ll+a+p+  r+ +++sl+ eA+ r+ +P+yG++g+i++++++l+++++e+
  Dca59120.1   4 SCNGCRVLRKGCSEDCSIRPCLewiksPSAQSNATLFLAKFYGRAGLLNLLSAAPDPLRPSIFRSLLEEACGRIVNPIYGSTGLISSGNWHLCEAAVEA 102
                 6************************************************************************************************99 PP

      DUF260  95 allke 99 
                 +l ++
  Dca59120.1 103 VLNGS 107
                 98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9453109IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKFSCNGCRV LRKGCSEDCS IRPCLEWIKS PSAQSNATLF LAKFYGRAGL LNLLSAAPDP  60
LRPSIFRSLL EEACGRIVNP IYGSTGLISS GNWHLCEAAV EAVLNGSPIT QIPTEATVEN  120
LGTVFNACDI RHVSNKNKND DKEPLKKSNK VKNQTRFKRS KPKSKTVKPA DESSMGDSVG  180
RDGSGVSAVE SVETDEDTLA KPNKVGHDVA LRLTLGFHTL EKTTASDEDV YGSGNEMADF  240
ELRLGLPEVC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168572.11e-76PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9ZW962e-69LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A438JZ914e-75A0A438JZ91_VITVI; LOB domain-containing protein 41
TrEMBLF6GTL04e-75F6GTL0_VITVI; Uncharacterized protein
STRINGVIT_17s0000g03720.t016e-76(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-71LOB domain-containing protein 40