PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca5917.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 235aa MW: 27402.6 Da PI: 7.8218

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca5917.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.3	1.2e-39	14	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgel 99 lppG+rFhPtdee++ eyL+ kv +l++ +vi+evd ++++Pw+Lp +v e++ yfF k++ k+++ +k+++r+t sgyWka ++k++ + ++++ Dca5917.1 14 LPPGLRFHPTDEEILFEYLRCKVFCLPLPA-SVIPEVDFLNFDPWNLPGNV---EEKRYFFYKKQLKNTRkQKKNQRVTGSGYWKANSSTKQINAPQTHH 109 79**************************.99***********554...44567777777666651556667*************984433 PP NAM 100 .......vglkktLvfykgrapkgektdWvmheyrl 128 glkk++vfy+g+ pkg++t+W mhey+l Dca5917.1 110 nnlgnftHGLKKSFVFYQGKPPKGHRTHWYMHEYSL 145 4566666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-42	10	167	IPR003441	NAC domain
PROSITE profile	PS51005	44.155	14	167	IPR003441	NAC domain
Pfam	PF02365	3.6E-21	15	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MERQNYVGNS LTKLPPGLRF HPTDEEILFE YLRCKVFCLP LPASVIPEVD FLNFDPWNLP 60 GNVEEKRYFF YKKQLKNTRK QKKNQRVTGS GYWKANSSTK QINAPQTHHN NLGNFTHGLK 120 KSFVFYQGKP PKGHRTHWYM HEYSLHFHQN CEDLNVEDWV ICTVFMKHRT EEVYDSSLLI 180 NEEQCSDNIY SYSMNNVGPS TYDNYCASPT SSSTSVYKVS PYEFNCSGEG NSYSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	14	172	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	14	172	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	14	172	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	14	172	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	14	172	20	173	NAC domain-containing protein 19
3swm_B	2e-31	14	172	20	173	NAC domain-containing protein 19
3swm_C	2e-31	14	172	20	173	NAC domain-containing protein 19
3swm_D	2e-31	14	172	20	173	NAC domain-containing protein 19
3swp_A	2e-31	14	172	20	173	NAC domain-containing protein 19
3swp_B	2e-31	14	172	20	173	NAC domain-containing protein 19
3swp_C	2e-31	14	172	20	173	NAC domain-containing protein 19
3swp_D	2e-31	14	172	20	173	NAC domain-containing protein 19
4dul_A	2e-31	14	172	17	170	NAC domain-containing protein 19
4dul_B	2e-31	14	172	17	170	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A218L0U9	9e-54	A0A218L0U9_CARPA; NAC4 protein
STRING	evm.model.supercontig_99.63	2e-54	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	9e-49	NAC domain containing protein 83