PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5928.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TCP
Protein Properties Length: 320aa    MW: 34309.5 Da    PI: 7.0561
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5928.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.91.5e-33522052109
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 
                a+k+ +++++hTkv+gR RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+pai + tg+++++as+  ++s sss+s ss +             
  Dca5928.1  52 APKRATTKDRHTKVDGRSRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPAIVATTGSGTIPASFL-TGSGSSSGSGSSMSlgllhskmgaesv 150
                789*************************************************************99999776.444444444333334566666677777 PP

        TCP  89 ....................................kaaksaakskksqksaasaln 109
                                                    +aa++++++++++++++  +n
  Dca5928.1 151 sragwpafdslgrsqvvggpgssmwpginpgyfgnlSAATTTNNNSNNNNNSN--SN 205
                77778888888888888888888888888777765422222222222222222..22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-3457205IPR005333Transcription factor, TCP
PROSITE profilePS5136926.59958112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDDTRATEEH ELLTTALTTT TTTTAATTAT TAVSSLFKED TAAHKKQQQQ LAPKRATTKD  60
RHTKVDGRSR RIRMPALCAA RVFQLTRELG HKTDGETIQW LLQQAEPAIV ATTGSGTIPA  120
SFLTGSGSSS GSGSSMSLGL LHSKMGAESV SRAGWPAFDS LGRSQVVGGP GSSMWPGINP  180
GYFGNLSAAT TTNNNSNNNN NSNSNSHSGN QLFDTTNMSG QNPGYVTNFQ LQGVGLPTSN  240
MGLLSFTPIL ARGNQIPGLQ LGLSQDGHGV IGQIYQHPTN EHEPQQHQQQ HQQQQSSAEE  300
LHQHLQQQQT HSDDNNSREQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758425.13e-87transcription factor TCP20-like
TrEMBLA0A0K9RFH81e-82A0A0K9RFH8_SPIOL; Uncharacterized protein
STRINGcassava4.1_012485m3e-60(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.16e-39TCP family protein