PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5929.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 193aa    MW: 21963.6 Da    PI: 9.2716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5929.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63e-2994147154
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 
                ldDgy+WrKYGqK vk+++fprsYYrCt+ gC+vkk+v+r ++d+ vv++tYeg
  Dca5929.1  94 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYVGCNVKKQVQRLSKDEGVVVTTYEG 147
                59**************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-3079147IPR003657WRKY domain
SuperFamilySSF1182906.93E-2686147IPR003657WRKY domain
PROSITE profilePS5081126.2889147IPR003657WRKY domain
SMARTSM007748.5E-3294153IPR003657WRKY domain
PfamPF031066.0E-2395147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MENIDITAPY FSTTNISISQ STFIPPYYVD EDYKHGIIEG MSSDFRHDDG KGLAPDEVGC  60
SSDGIIKESK KESKDKKVRK HRFAFHTRSQ VDILDDGYRW RKYGQKAVKN NKFPRSYYRC  120
TYVGCNVKKQ VQRLSKDEGV VVTTYEGFVR IEGGRWWSRW WWWAGGGEGG GGPASGQAAG  180
CRGAVGWVVR WEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2385147870Probable WRKY transcription factor 4
2lex_A1e-2385147870Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758430.11e-50probable WRKY transcription factor 75
STRINGXP_010695387.12e-48(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.11e-38WRKY DNA-binding protein 75