PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59343.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 392aa    MW: 43884.3 Da    PI: 6.4196
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59343.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.8e-33200258159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vk+s+fprsYYrCt+ gC vkk+vers +dp++v++tYeg+H+h+
  Dca59343.1 200 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTVGCVVKKRVERSCDDPSTVVTTYEGNHTHP 258
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-34185260IPR003657WRKY domain
SuperFamilySSF1182905.49E-29193260IPR003657WRKY domain
PROSITE profilePS5081132.214195260IPR003657WRKY domain
SMARTSM007742.6E-38200259IPR003657WRKY domain
PfamPF031065.8E-26201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSNINNNNNN KIMMNKSIFQ VALQEEIMNG VSDFDALLGF SSDYLPPSLS PPRDHYYNYN  60
YNHFTNNYNY NYNNDDDHNN NNNNNNYCCD HRLRKQVTVD PCLTGESSEV VNTPTPMTPN  120
SVSVSSSSED VENRLRKNKE LQSKIGDGDG DGDEDAAAAD ESNLVEQDKS KKQLKPEKKY  180
QKRPKEPRVA FKTKSEVDHL DDGYRWRKYG QKAVKNSPFP RSYYRCTTVG CVVKKRVERS  240
CDDPSTVVTT YEGNHTHPCP VMARGGLGFG MSSLIIPNPG PLDQCSTGPT LPVSFGVTGA  300
ALSQSLFFQP SPESFLHRHL YQQKPSQFPS YFQNNSISSS INFTTSIGGA TNSNTTSMMA  360
DNNKQFQPQV RVDGLLQDVV TSQILNDDQQ ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28190261778Probable WRKY transcription factor 4
2lex_A4e-28190261778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021774274.17e-73probable WRKY transcription factor 23
TrEMBLA0A0K9QEI85e-58A0A0K9QEI8_SPIOL; Uncharacterized protein
STRINGXP_010671761.13e-59(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-42WRKY DNA-binding protein 48