PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca59489.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 961aa MW: 110492 Da PI: 9.3267

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca59489.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.7	7.8e-13	292	398	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek..dgkwevtkl 81 +fY YA+ +GF+ rk + kk r g ++ vC+++g r +++k e+ r+ ++tr+gC+a ++ ++ + +g ++ + Dca59489.1 292 EFYGVYARACGFTPRKYTAKKL-RGGVAHQKFIVCNRQGWRGNKQKVrhspvhddnngdtsstVETVTRRVKVTRIGCRAYVRFSLLNglEGPAIIDGF 389 6*************998887.8888888999*****9999899******99976777778899*********99999**** PP FAR1 82 eleHnHela 90 ++ HnH l+ Dca59489.1 390 SEFHNHRLT 398 ****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03004	2.4E-7	154	233	IPR004252	Probable transposase, Ptta/En/Spm, plant
Pfam	PF03101	2.1E-8	292	398	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-27	473	566	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	754	790	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.3E-4	755	786	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-4	765	792	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MGGQSWYRKI LGSGSGSCHS RRENENEEIN EEEEISEKET NEGPTAAQES RQLILSADRS 60 HPDHKWWDDK DIKSYVTWSF MRSLGDEVFF TWGGASNAQR TKMWHYFASH VKSIDPGYDP 120 MPEWQLRVTR RIIQLINGLK YNKRKPEWVP LSWWPRLESR LSDPTFAKHS KQNKINRRAG 180 DKDGKALGTH TLGRKSGSEA FRELGPEPTP YKLFEKTKKN KKGGWVDPRA KSTNVNPVNS 240 TPIVQEQSNA QPNNQLVVSH TPNGSERWIR VTESKFRPTI GTVFSSLEAG IEFYGVYARA 300 CGFTPRKYTA KKLRGGVAHQ KFIVCNRQGW RGNKQKVRHS PVHDDNNGDT SSTVETVTRR 360 VKVTRIGCRA YVRFSLLNGL EGPAIIDGFS EFHNHRLTSV CNRDLDKISR GLDMFQKQRE 420 RDADLFLDYL KKLKATQNQF YFAYDVDNCN SITKIFWADA TSIRNYSLFG DAMSLDPTYG 480 TNKYDMVFTP FTGVNHHRKS MFFAGCLLLH EDELSFKWAF QNFLNAMGNK EPQFVITDQC 540 PGIKKAFPSA FKQARHRYCM WHITQKITDK VGSALCRDTD FLTRFNAVVW DSDLEPLEFE 600 EKWQQLISDF QLEDNDWLDQ MFIDRKHWIP AYHRDLSMGC ILRTTQRSES ANSFFKRYEN 660 HFGTLVEFWL RFQTALDQQR YTRKCDDYDS DHSLPILDTT VKLEKHGALV YTHAVFKVFQ 720 EEVKCALTCG VAGFVKEDNV RIIHVEDSET NRTFKVTFNL STLDVECACK LFERTGLLCR 780 HILWVYKGKG IQKIPSKYIL DRWCKNSHAS NRLDCNGNVI DDVNMAQSDN SHMCKLWAEF 840 SATVGALKTL PTIHTDELAS LLVEFREKLS VQPLTKEQEM EVLLGCSSSS EVTIRNPVQA 900 HNKGSGKRLK SAKTIAIEKA AKPKRLCAYC KEKIDHDKRT CPLRIADAAV AKTSKSKKKK 960 V

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MGGQSWYRKI LGSGSGSCHS RRENENEEIN EEEEISEKET NEGPTAAQES RQLILSADRS  60
HPDHKWWDDK DIKSYVTWSF MRSLGDEVFF TWGGASNAQR TKMWHYFASH VKSIDPGYDP  120
MPEWQLRVTR RIIQLINGLK YNKRKPEWVP LSWWPRLESR LSDPTFAKHS KQNKINRRAG  180
DKDGKALGTH TLGRKSGSEA FRELGPEPTP YKLFEKTKKN KKGGWVDPRA KSTNVNPVNS  240
TPIVQEQSNA QPNNQLVVSH TPNGSERWIR VTESKFRPTI GTVFSSLEAG IEFYGVYARA  300
CGFTPRKYTA KKLRGGVAHQ KFIVCNRQGW RGNKQKVRHS PVHDDNNGDT SSTVETVTRR  360
VKVTRIGCRA YVRFSLLNGL EGPAIIDGFS EFHNHRLTSV CNRDLDKISR GLDMFQKQRE  420
RDADLFLDYL KKLKATQNQF YFAYDVDNCN SITKIFWADA TSIRNYSLFG DAMSLDPTYG  480
TNKYDMVFTP FTGVNHHRKS MFFAGCLLLH EDELSFKWAF QNFLNAMGNK EPQFVITDQC  540
PGIKKAFPSA FKQARHRYCM WHITQKITDK VGSALCRDTD FLTRFNAVVW DSDLEPLEFE  600
EKWQQLISDF QLEDNDWLDQ MFIDRKHWIP AYHRDLSMGC ILRTTQRSES ANSFFKRYEN  660
HFGTLVEFWL RFQTALDQQR YTRKCDDYDS DHSLPILDTT VKLEKHGALV YTHAVFKVFQ  720
EEVKCALTCG VAGFVKEDNV RIIHVEDSET NRTFKVTFNL STLDVECACK LFERTGLLCR  780
HILWVYKGKG IQKIPSKYIL DRWCKNSHAS NRLDCNGNVI DDVNMAQSDN SHMCKLWAEF  840
SATVGALKTL PTIHTDELAS LLVEFREKLS VQPLTKEQEM EVLLGCSSSS EVTIRNPVQA  900
HNKGSGKRLK SAKTIAIEKA AKPKRLCAYC KEKIDHDKRT CPLRIADAAV AKTSKSKKKK  960
V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-77	FAR1-related sequence 5