PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca59516.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 255aa MW: 28974.5 Da PI: 7.0636

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca59516.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.3e-10	145	192	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+riN+++ L++l+P + k + a++L ++Y++sLq Dca59516.1 145 SHSLAERVRRERINEKLKVLQDLVPGC----YKTMAMASMLDVIINYVRSLQ 192 8***********************9....356999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-17	139	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.49E-12	139	196	No hit	No description
PROSITE profile	PS50888	15.859	141	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	141	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-7	145	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-9	147	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:2000488	Biological Process	positive regulation of brassinosteroid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEDFSSDLHK VLEPGGSFSE LNNLSDHLNQ PLNSQFLDYF SNDVFLSNPN VPQQAPVQVV 60 PHHQRAFCAF DQANNNNAEF CVQKQEKNVF EMSGFAELGS SSGHHRAENF SGSVERKRKR 120 KSEGKGDKLK EVIHVRAKRG QATDSHSLAE RVRRERINEK LKVLQDLVPG CYKTMAMASM 180 LDVIINYVRS LQNQIEFLSM KLSAASMVYD FNSPEAEAFE TLLKTTNLYV AHETEKSARE 240 GCRETFPRSH STWPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	RKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010681492.1	7e-88	PREDICTED: transcription factor bHLH75
Swissprot	A4D998	2e-50	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A0K9QPE7	6e-73	A0A0K9QPE7_SPIOL; Uncharacterized protein
STRING	XP_010681492.1	3e-87	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	5e-53	bHLH family protein

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]