PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca59571.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 799aa MW: 91319.1 Da PI: 8.1313

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca59571.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.7	3.7e-13	105	198	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ GF +rk + k+ r+g+ +++ vC+ g+ +k+ e+ r ++ ++gCka++++ +gk+ v+++ +eHnHel Dca59571.1 105 NFYNIYGIGSGFGTRKYSAKHW-RDGSLKSKLIVCNSVGSYYAKKNPskeddsVETIGRITSILNVGCKARIRLFCL-NGKFTVYEFTEEHNHELL 198 6**************98887.8999******99877666664455555555567788899****998.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-10	105	198	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-29	320	412	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.804	601	639	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MRFTFKFSVT MLGAALLSLS VVLVVTLLLS LCTAVVMLSL RTEDVSSMWL AGAEQRGLGR 60 SRSTSGSLEG VDLNGINEGA LCENVEKDFK PYVGQEFVSV EEAANFYNIY GIGSGFGTRK 120 YSAKHWRDGS LKSKLIVCNS VGSYYAKKNP SKEDDSVETI GRITSILNVG CKARIRLFCL 180 NGKFTVYEFT EEHNHELLSV QEREFKKLAS NLTYYHKNFI VSNIRLKIGA TKTYRMIKEH 240 VNGFSNVGAT LNQFKNFQRD LKCFIHEKDG QLFVDRFKSM ADNRSGFFFD FDVDADGSLR 300 RAIWADAEAI RNYEVFGDAL SFDPTYSTNK YSMIFTPFTG VDNHKSTITF SGALIANEDY 360 ESFNWVFDRF LKAMGGKEPE YIITDQDPAI IKSVGHIFKR SRHRFCMWHI MNKVPLKFGG 420 ASSDLTEFVR KLNGIVWDAE IGAADFDCRW LEIMNEHGVG KGDWFEECFS IRRQWVMAHC 480 RDLRMGSLLR TTQRSESSNS FFKKFEHKSG TLVEFWLRFE SAIEQQRHNK NILDTKDRHS 540 TPTTMITKSK IEEYGAKVYT HKIFQEFQEE VRCSISNCIV RGYREEDGEQ ITTLKGSAND 600 IVIDVHYNPV TSEMRCSCTL YERKGLPCRH IFWLCTCHAI EKIPSSLLAR RWLKQEVFEI 660 GEGVQQLQLS SGRNQDGRQS EMTKLWAEIN ETVAFVQRGD LPNVIELCEN LKKFREEHES 720 CGETVTKDQE FENLLGCKVI SEVSILPPMQ SKNKGSGKRM LSSKNVAVAV ASKQKRMCKN 780 CKQLANHDKR NCPFPFVED

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MRFTFKFSVT MLGAALLSLS VVLVVTLLLS LCTAVVMLSL RTEDVSSMWL AGAEQRGLGR  60
SRSTSGSLEG VDLNGINEGA LCENVEKDFK PYVGQEFVSV EEAANFYNIY GIGSGFGTRK  120
YSAKHWRDGS LKSKLIVCNS VGSYYAKKNP SKEDDSVETI GRITSILNVG CKARIRLFCL  180
NGKFTVYEFT EEHNHELLSV QEREFKKLAS NLTYYHKNFI VSNIRLKIGA TKTYRMIKEH  240
VNGFSNVGAT LNQFKNFQRD LKCFIHEKDG QLFVDRFKSM ADNRSGFFFD FDVDADGSLR  300
RAIWADAEAI RNYEVFGDAL SFDPTYSTNK YSMIFTPFTG VDNHKSTITF SGALIANEDY  360
ESFNWVFDRF LKAMGGKEPE YIITDQDPAI IKSVGHIFKR SRHRFCMWHI MNKVPLKFGG  420
ASSDLTEFVR KLNGIVWDAE IGAADFDCRW LEIMNEHGVG KGDWFEECFS IRRQWVMAHC  480
RDLRMGSLLR TTQRSESSNS FFKKFEHKSG TLVEFWLRFE SAIEQQRHNK NILDTKDRHS  540
TPTTMITKSK IEEYGAKVYT HKIFQEFQEE VRCSISNCIV RGYREEDGEQ ITTLKGSAND  600
IVIDVHYNPV TSEMRCSCTL YERKGLPCRH IFWLCTCHAI EKIPSSLLAR RWLKQEVFEI  660
GEGVQQLQLS SGRNQDGRQS EMTKLWAEIN ETVAFVQRGD LPNVIELCEN LKKFREEHES  720
CGETVTKDQE FENLLGCKVI SEVSILPPMQ SKNKGSGKRM LSSKNVAVAV ASKQKRMCKN  780
CKQLANHDKR NCPFPFVED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-70	FAR1-related sequence 5