PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59602.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 842aa    MW: 97147.6 Da    PI: 5.9239
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59602.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.9e-1330107790
                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 p ++ +s  +++p +f +++++k    k++tl + sg+ W v++  +  +g   +t GW+ Fv+ n L+ + f++F +++ ++f
  Dca59602.1  30 PDHNDNSITMSIPIQFSDKYDIK----KKVTLINFSGKAWHVYV--ELIDGVLHFTYGWSVFVENNALERRQFLIFNYERATSF 107
                 667888899***********977....48***************..99999999***********************9987777 PP
2B343.36.3e-14210297196
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ff    p ++ +s  +++p +f +++++k    k+ tl++ sg+ W v++  +  +g   +t GW+ Fv+ n L+ + f++F +++ ++f  +v v
  Dca59602.1 210 FFRCYCPDHNDNSITMSIPIQFSDKYDIK----KKATLKNFSGKAWHVYV--EPVDGVLHFTYGWSVFVENNALERRQFLIFNYERATSF--YVVV 297
                 66677788999999************977....479**************..******9*************************988888..5544 PP
3B343.36.3e-14459546196
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ff    p ++ +s  +++p +f +++++k    k+ tl++ sg+ W v++  +  +g   +t GW+ Fv+ n L+ + f++F +++ ++f  +v v
  Dca59602.1 459 FFRCYCPDHNDNSITMSIPIQFSDKYDIK----KKATLKNFSGKAWHVYV--EPVDGVLHFTYGWSVFVENNALERRQFLIFNYERATSF--YVVV 546
                 66677788999999************977....479**************..******9*************************988888..5544 PP
4B340.84e-13749832190
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 ff    p ++ +s  +++p +f +++++k    k++tl + sg+ W v++  +  +g   +t GW+ Fv+ n L+ + f++F +++ ++f
  Dca59602.1 749 FFRCYCPDHNDNSITMSIPIQFSDKYDIK----KKVTLINFSGKAWHVYV--ELIDGVLHFTYGWSVFVENNALERRQFLIFNYERATSF 832
                 66677788999999************977....48***************..99999999***********************9987777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.84E-1318113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1220110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-822110No hitNo description
PROSITE profilePS5086311.30724115IPR003340B3 DNA binding domain
SMARTSM010190.007624115IPR003340B3 DNA binding domain
PfamPF023621.2E-930107IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-14204301IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-14205301IPR015300DNA-binding pseudobarrel domain
CDDcd100177.55E-10208296No hitNo description
PfamPF023621.6E-11210297IPR003340B3 DNA binding domain
SMARTSM010190.0011210301IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702210301IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-14453550IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-15453550IPR015300DNA-binding pseudobarrel domain
CDDcd100177.55E-10457545No hitNo description
PfamPF023621.6E-11459546IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702459550IPR003340B3 DNA binding domain
SMARTSM010190.0011459550IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-5649723IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-4650724IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-13743835IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-14743838IPR015300DNA-binding pseudobarrel domain
CDDcd100173.66E-9747835No hitNo description
PfamPF023626.2E-10749832IPR003340B3 DNA binding domain
PROSITE profilePS5086311.378749840IPR003340B3 DNA binding domain
SMARTSM010190.0017749840IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MLNTKHKEAT ISSRAILDRS SPSFYRCYCP DHNDNSITMS IPIQFSDKYD IKKKVTLINF  60
SGKAWHVYVE LIDGVLHFTY GWSVFVENNA LERRQFLIFN YERATSFYVV DYGETGIIKD  120
EEPSVDETCA GAASSSNHIN NVLSDASDDE VASVNLSRDE DDDNNYDLEL HFRKTIKTHL  180
KNFVQKMLNT KHKEATISSR AILERSSPSF FRCYCPDHND NSITMSIPIQ FSDKYDIKKK  240
ATLKNFSGKA WHVYVEPVDG VLHFTYGWSV FVENNALERR QFLIFNYERA TSFYVVVYGE  300
NGIMKDEELS VDETCAGASS SMHINNVPSD ASDDEVASVD LARDEDDDNN NDLELRFRKT  360
IKTHLKNFVI ILVKVVKKCV MMLPQSVKLS SEDGFHIKTE LREQSDRIII GYTKMFMFWR  420
DTNVKIGDVL EFQQKMLNTK HKEATISSRA ILERSSPSFF RCYCPDHNDN SITMSIPIQF  480
SDKYDIKKKA TLKNFSGKAW HVYVEPVDGV LHFTYGWSVF VENNALERRQ FLIFNYERAT  540
SFYVVVYGEN GIMKDEELSV DETCAGASSS MHINNVPSDA SDDEVASVDL ARDEDDDNNN  600
DLELRFRKTI KTHLKNFPSD ASDDEVASVD LARDKDDDNN NDLELRFRKT IKTHLKNFVI  660
IPVKVVKKCV IMLPQSVKLS SEDGFHIKTE LREQSDRIII GYSKMFMFWR DTKVKIGDVL  720
EFQQKMLNTK HKEATISSRA ILERSSPSFF RCYCPDHNDN SITMSIPIQF SDKYDIKKKV  780
TLINFSGKAW HVYVELIDGV LHFTYGWSVF VENNALERRQ FLIFNYERAT SFYVVDYGET  840
GI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.14e-10B3 family protein