PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59690.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 437aa    MW: 47699.5 Da    PI: 6.9376
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59690.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.63.4e-1896183187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 +W++  + +L++a++e+ ++l+rg+l++ +Weev+  +  r +  ++s +qCk+k +nl+kr+k +++++++ ++ ++s++p+f+++ea
  Dca59690.1  96 EWSDTAIECLLDAYTEKYTQLNRGNLRGRDWEEVAGIVseRCENQSKSVEQCKNKVDNLKKRFKLERHRMNS-SNVVVSHWPWFKKMEA 183
                 5*************************************666677899************************9.589999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2094184No hitNo description
SMARTSM005955.8E-5104189IPR006578MADF domain
Gene3DG3DSA:3.40.1160.101.1E-22238347IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.08E-35242430IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.101.3E-17349430IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTSCDEDDDD FSLLATSEHQ HQHQHFSSND AVFVNPYEST GFDPDPSPNS KRKDRDDVSD  60
AGTTAATASI FKKSKSPVIS PTTTTNSGDY RKDREEWSDT AIECLLDAYT EKYTQLNRGN  120
LRGRDWEEVA GIVSERCENQ SKSVEQCKNK VDNLKKRFKL ERHRMNSSNV VVSHWPWFKK  180
MEAIVGHLLA SKAVSDDDKV AGSSGGGSSN GGGRSHKRYA TGTPGTFGQI NNVKSKSVPT  240
TKWQRVVFKI SGAALAGNGP HNVDPKVVML IAREVALSYR LGVQVAIAIG GRNFFCGDTW  300
RNATGADRCL TYQIGMMATM MNSVLIQSAL EKLGVETRVQ TAISFPEIVQ AQAVIKGANV  360
DGIHDCTSRS NGIIFEHISF REAASRGPTS LDMMALTLCE ENGIPVVVFN LHEPGNISRA  420
LCGEQIGTLI DQTGMVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-302354301239Uridylate kinase
3ek5_B1e-302354301239Uridylate kinase
3ek5_C1e-302354301239Uridylate kinase
3ek5_D1e-302354301239Uridylate kinase
3ek5_E1e-302354301239Uridylate kinase
3ek5_F1e-302354301239Uridylate kinase
3ek6_A1e-302354301239Uridylate kinase
3ek6_B1e-302354301239Uridylate kinase
3ek6_C1e-302354301239Uridylate kinase
3ek6_D1e-302354301239Uridylate kinase
3ek6_E1e-302354301239Uridylate kinase
3ek6_F1e-302354301239Uridylate kinase
3nwy_A3e-3024343050279Uridylate kinase
3nwy_B3e-3024343050279Uridylate kinase
3nwy_C3e-3024343050279Uridylate kinase
3nwy_D3e-3024343050279Uridylate kinase
3nwy_E3e-3024343050279Uridylate kinase
3nwy_F3e-3024343050279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865518.10.0uncharacterized protein LOC110804258 isoform X1
TrEMBLA0A0K9RPR70.0A0A0K9RPR7_SPIOL; Uncharacterized protein
STRINGXP_010683919.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-159Trihelix family protein