PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca5971.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 356aa MW: 39984.9 Da PI: 8.2629

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca5971.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.2	3e-09	63	156	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f +YA + GF+v ++++ + + + + t +C gk+e++ + + ++r+++++ tgCka ++ + d+ +++++++leHnHel Dca5971.1 63 FIISYALKKGFEVFTRSNALKAEFR-NASVTRKC--GGKKESRYHMmerlrlackKGGRKRSEKSNVTGCKAYFEGAIQ-DDGFVIKTVHLEHNHELD 156 5568*******999888773333.34444455..444444444455899999877888899999*****9999.999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-7	63	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-31	240	333	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MKRKLAGFLE IIFGGNSIDE VVLADGLPNP IEPSGNAVEG ANDDIGDPTV GMVFPNCDSF 60 AEFIISYALK KGFEVFTRSN ALKAEFRNAS VTRKCGGKKE SRYHMMERLR LACKKGGRKR 120 SEKSNVTGCK AYFEGAIQDD GFVIKTVHLE HNHELDPGNS RFKVSARTIT DYFKERTVLN 180 DRAGIPIKKN FNAMVIEAGG HENLPFNHRD LRNLVNLARR LERINGDAAA LEQYFVFGDV 240 VTYDTTFLCN RYCLPFSPFI GVNHHGNSIC FATALITNED TETFIWVFER WLECMGKAPP 300 VILLDQDKAI GKAIETVFPG SKHQLCLWHM MRNAVKNLGR YGFWKELCSD LKAVVA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MKRKLAGFLE IIFGGNSIDE VVLADGLPNP IEPSGNAVEG ANDDIGDPTV GMVFPNCDSF  60
AEFIISYALK KGFEVFTRSN ALKAEFRNAS VTRKCGGKKE SRYHMMERLR LACKKGGRKR  120
SEKSNVTGCK AYFEGAIQDD GFVIKTVHLE HNHELDPGNS RFKVSARTIT DYFKERTVLN  180
DRAGIPIKKN FNAMVIEAGG HENLPFNHRD LRNLVNLARR LERINGDAAA LEQYFVFGDV  240
VTYDTTFLCN RYCLPFSPFI GVNHHGNSIC FATALITNED TETFIWVFER WLECMGKAPP  300
VILLDQDKAI GKAIETVFPG SKHQLCLWHM MRNAVKNLGR YGFWKELCSD LKAVVA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021853860.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-40	FAR1-related sequence 5