PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca59719.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

TCP

Protein Properties

Length: 264aa MW: 27529.6 Da PI: 10.0122

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca59719.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.2	3.6e-39	27	132	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.......... 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++++ ss ++ +++ Dca59719.1 27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPHTLSSHHH--HHHglaaaaaadp 123 789*****************************************************************9888543344333333..2223455555555 PP TCP 89 ........k 89 k Dca59719.1 124 kptpfllgK 132 555555542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.2E-33	33	132	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MSATDATPSA ATTTNTTTTT NTNTTLAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTS SPHTLSSHHH HHHGLAAAAA 120 ADPKPTPFLL GKRLRTSAEE EQEQQNGVVL HKEDGGVTTA TVGPAAAGYW AIPARPDFWS 180 FAPSEMVLGH HHSGLGSGAG MGARLFSGSL GIQHHPGLGD GSGSASRVGN YLPIAQGHHL 240 NLLASLSGAS PPSGSGPRRE DDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021750556.1	5e-95	transcription factor TCP7-like
Swissprot	Q9FMX2	8e-71	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0K9R6R1	2e-89	A0A0K9R6R1_SPIOL; Uncharacterized protein
STRING	XP_010688658.1	1e-77	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-43	TCP family protein