PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59837.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 575aa    MW: 64672.2 Da    PI: 8.2958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59837.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05110132123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F r  nL+ H r H
  Dca59837.1 110 FVCEICSKGFQRDQNLQLHRRGH 132
                 89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-5109132No hitNo description
Gene3DG3DSA:3.30.160.608.2E-5109132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887110132IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-5182207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MIKQQQQQQQ DQQQVYVEEN ISNLTSPPVS GEASVSSSSN RGEPSTSIYP LHHHQQQHQQ  60
YFSQQQQQQH EQVEQLQPLP KKKRNQPGNP DPDSEVVALS PKTLLAKNRF VCEICSKGFQ  120
RDQNLQLHRR GHNLPWKLKQ RSKTEVIRKK VYVCPEPSCV HHDPSRALGD LTGIKKHFCR  180
KHGEKKWKCE NCSNKYAVQS DWKAHSKVCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE  240
ETARAITTTV TTHPLLTNTI SALPSNSTHF ITMQQQQQQQ FQQQQQQLMN NQQQQDNNNI  300
NTLHAFPLKR EQHTNFMTNL PPWLSCSPLD HLNSPSSSQS SIIFHQQQQQ QQQQQQQDDH  360
HNHNHSHNQV QQLHLQQQNQ NQNPSNPRMG PTYTTTAAAA TTPHMSATAL LQQAAQMGAT  420
MSNNHSHVTD NSTTNTTPTT STAGLFGLNL SSRDHQHQHH PGPSPGPSSY LHDMMVNSIS  480
SSYDDAFGMG DMGGMFKNKD NTFQLGGSRD DGGGGGGGKV NEGLTRDFLG LRPLSQNDIL  540
TIAELSNCMA TNTSNSQQQQ QQQHGQGGGH KPWQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33183244364Zinc finger protein JACKDAW
5b3h_F5e-33183244364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138149KQRSKTEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685384.10.0PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F51e-115IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLB9SN271e-158B9SN27_RICCO; Nucleic acid binding protein, putative
STRINGXP_010685384.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-101indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]