PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca59864.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 122aa MW: 13739.1 Da PI: 4.0235

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca59864.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5e-07	16	49	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 rg W++eEd++l d++ q+G +W++ ++ + Dca59864.1 16 RGLWSPEEDQRLQDYILQFGVSSWTSLPANAE-WL 49 789*********************99988776.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.36E-7	8	45	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.168	11	42	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.5E-8	15	46	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MGLIKTMETL NRKHKRGLWS PEEDQRLQDY ILQFGVSSWT SLPANAEWLT TDNYNNSTVQ 60 NDELVYDADL MECFRFDDEG SSISIDKLYH GEFANGFIDQ SSGVGSCCFV GASAENAAFT 120 EF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	8e-10	myb domain protein 18