PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59874.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 723aa    MW: 80491.9 Da    PI: 6.0018
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59874.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-1946101156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r++ +++t++q++eLe++F+  ++p++++r eL ++lgL+ rqVk+WFqNrR++ k
  Dca59874.1  46 RKRYHRHTPQQIKELESYFKVVNHPDEKQRLELGRRLGLEGRQVKFWFQNRRTQLK 101
                 789999**********************************************9987 PP
2START150.91.1e-472454653205
                 HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
       START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
                 a + + el+++a+ ++p+W+k      e +n +e+ +kf+  +v     +++a r++g v+ ++ +lve+++  + + +  ++    ka+t+ev+ +g 
  Dca59874.1 245 AMASMVELLAMAQTDSPLWFKGLeegrELLNHEEYAKKFSFLGVkpcgLTTDATRETGSVFITSLELVETMMFPS-RLKDAFPclvgKAATTEVLFNGn 342
                 5678899**************999999999*********877779********************9**9999999.77777777777************ PP

                 .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
       START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                      g+lqlm+ae++ +splvp R   ++Ry +q+++g w++vdvS+d  ++ ++s s+v+ ++lpSg++i++ +ng+s vtw+ehv+++++ +h+l+
  Dca59874.1 343 ngtrdGELQLMNAEFVYPSPLVPlRQEKILRYAKQHSEGMWAVVDVSIDMIRESSSSGSSVKWRRLPSGCIIQDAPNGYSLVTWIEHVEYDENCIHQLY 441
                 *****************************************************99999***************************************** PP

                 HHHHHHHHHHHHHHHHHHTXXXXX CS
       START 182 rslvksglaegaktwvatlqrqce 205
                 rslv+sg+a+ga++w+atlqr +e
  Dca59874.1 442 RSLVRSGMAFGARRWLATLQRERE 465
                 *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1927103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-1941109IPR009057Homeodomain-like
PROSITE profilePS5007116.95743103IPR001356Homeobox domain
SMARTSM003892.7E-1644107IPR001356Homeobox domain
CDDcd000861.37E-1545104No hitNo description
PfamPF000463.1E-1746101IPR001356Homeobox domain
PROSITE profilePS5084831.954234469IPR002913START domain
SuperFamilySSF559611.37E-22235462No hitNo description
CDDcd088751.88E-90238462No hitNo description
SMARTSM002343.4E-32243466IPR002913START domain
PfamPF018525.2E-40245465IPR002913START domain
SuperFamilySSF559611.76E-10497714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MGFYGEQFRA YESENNDTLS IDDHVIEGSS HDVSTNNIST KKGVRRKRYH RHTPQQIKEL  60
ESYFKVVNHP DEKQRLELGR RLGLEGRQVK FWFQNRRTQL KTQMERNENG LLKQEFEKLR  120
QENVALKEAL SNPICQNCGG PVMLGEVSVD DHQLRLENER LKSELIRVSS LAEKLLGRPV  180
SDFVTQLMSA TGNSNLDQSM GRNGPLNGLM GPPTTQVGLL SGPHLENEVS NNTIDYEKTV  240
FLQFAMASMV ELLAMAQTDS PLWFKGLEEG RELLNHEEYA KKFSFLGVKP CGLTTDATRE  300
TGSVFITSLE LVETMMFPSR LKDAFPCLVG KAATTEVLFN GNNGTRDGEL QLMNAEFVYP  360
SPLVPLRQEK ILRYAKQHSE GMWAVVDVSI DMIRESSSSG SSVKWRRLPS GCIIQDAPNG  420
YSLVTWIEHV EYDENCIHQL YRSLVRSGMA FGARRWLATL QRERECIAVF MSSRINPEDN  480
SVGNVGPEGK ISIVKLMKRI SNNFCAGLCA SSSHRWEKLQ IGGLAEDVSI MSRVSVSEPG  540
EPSGVVLSVS TSVWVPVPRQ LLFDFLRDEK LRGKWDILAN GGPMEVIVGF PKSQDCTNWV  600
SLFCPPAAPG KESNMLIVQE SWSDQTGAFI VYAPVASSLI ETVIRGEDSD YLALLPSGFA  660
ICDAPIMTSD RGPSSGVASV LTMGFQILVN NLPTAKLTVE SIETVNNLMF CTIQKIRASL  720
GVI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693471.10.0PREDICTED: homeobox-leucine zipper protein HDG1 isoform X4
RefseqXP_019107939.10.0PREDICTED: homeobox-leucine zipper protein HDG1 isoform X4
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0K9RDL30.0A0A0K9RDL3_SPIOL; Uncharacterized protein
STRINGXP_010693469.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]