PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59973.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 385aa    MW: 43118.4 Da    PI: 9.166
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59973.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.14.2e-3487143259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgse+prsYYrCtsa+Cpvkkkvers  d++++ei+Y+g+Hnhe
  Dca59973.1  87 DDGYNWRKYGQKQVKGSEYPRSYYRCTSANCPVKKKVERSF-DGHITEIIYKGQHNHE 143
                 8****************************************.***************8 PP
2WRKY1054e-33266324159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+H he
  Dca59973.1 266 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTEGCKVRKHVERASTDPKAVITTYEGKHIHE 324
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-3083145IPR003657WRKY domain
SuperFamilySSF1182901.7E-2684145IPR003657WRKY domain
SMARTSM007741.8E-3786144IPR003657WRKY domain
PfamPF031069.7E-2687143IPR003657WRKY domain
PROSITE profilePS5081124.69687145IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-36252326IPR003657WRKY domain
SuperFamilySSF1182901.96E-28258326IPR003657WRKY domain
PROSITE profilePS5081137.746261326IPR003657WRKY domain
SMARTSM007746.2E-38266325IPR003657WRKY domain
PfamPF031061.1E-25267323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQSPLGFSQQ QTLAQLTAQA HAALSQAQMN IHTDYQQPSS SLAPPHHNIP SAMSYRNPVF  60
NPSPSTAPTT EKRAATNFPI NVDKPADDGY NWRKYGQKQV KGSEYPRSYY RCTSANCPVK  120
KKVERSFDGH ITEIIYKGQH NHEPPQHGRR GNRDTGGVAV GNGGSEGPNN GHFRWSGKDS  180
DHSATTQATC MLLHGPSDSE ESGENYNYGE DEDEDEPDRK RRIKVFKIVD EFRGGGVAGQ  240
TDGPFTHRTM TEPKIVVQTR SEVDLLDDGY RWRKYGQKVV KGNPNPRSYY KCTTEGCKVR  300
KHVERASTDP KAVITTYEGK HIHEVPAPRG TTVNAPNFET QHLKLNNNNN TNNNSNNNSL  360
NHFNFNTKIQ SPVSLRLKQE HHNLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3887327878Probable WRKY transcription factor 4
2lex_A2e-3887327878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021721446.11e-141probable WRKY transcription factor 4
SwissprotQ9XI901e-104WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0K9QGS91e-134A0A0K9QGS9_SPIOL; Uncharacterized protein
STRINGXP_010670218.11e-139(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-95WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]