PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60139.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 306aa    MW: 35227.9 Da    PI: 7.5305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60139.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.7e-29153212159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK+ ++++ pr+Y++C+ a  C+vkkkv+r+aed+++++ tYegeHnh+
  Dca60139.1 153 VKDGYQWRKYGQKVTRDNPSPRAYFKCANApMCNVKKKVQRNAEDQSILVATYEGEHNHP 212
                 58**************************999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-28145213IPR003657WRKY domain
PROSITE profilePS5081125.304148214IPR003657WRKY domain
SuperFamilySSF1182901.57E-23149213IPR003657WRKY domain
SMARTSM007749.8E-33153213IPR003657WRKY domain
PfamPF031061.1E-23154212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MESSTNNKWV LDTSLGFNLD LNLSNNGYLH SNNIVQEEKK SEKLEEELNR MNTENKRLTQ  60
MLTSMCENYC ALQTQLMGLM SPSSILETDN IINTRKRKEF EMMEVMNRMQ GNNAEHSCIS  120
HEDSCKRPKL FATKPKVYKI LFRSHKSDTS LVVKDGYQWR KYGQKVTRDN PSPRAYFKCA  180
NAPMCNVKKK VQRNAEDQSI LVATYEGEHN HPRLNPTELD HEELESNNIV DSPSINPKLT  240
LDFPDINRNL TKKMDNIVDN DNVDTKVLQR LMIEKMASSL TRDPSFTSAL ATAISGNLME  300
NVHYRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-191522111674Probable WRKY transcription factor 4
2lex_A2e-191522111674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739597.11e-112probable WRKY transcription factor 40
TrEMBLA0A0K9QMM81e-110A0A0K9QMM8_SPIOL; Uncharacterized protein
STRINGXP_010667511.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-72WRKY DNA-binding protein 40