PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca60208.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 509aa MW: 57717.6 Da PI: 7.747

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca60208.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.1	6.8e-14	69	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ GF +rk + k+ r+g+ +++ vC++ g+ +k+ e+ r +++ ++gCka++++ +gk+ v+++ +eHnHel Dca60208.1 69 NFYNIYGIGSGFGTRKYTAKHW-RDGTLKSKLIVCNRVGSYYAKKNPskeddsVETIGRITSVLNVGCKARIRLFCL-NGKFTVDEFTEEHNHELL 162 6**************99988.8888********87776666555555555556788889*****998.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-11	69	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MRSLVGRVVT VGGGGRWWSS VAVVGGGQSS SLEGVYLNGI NEGALCENVE KDFMPYVGQE 60 FVSVEEAANF YNIYGIGSGF GTRKYTAKHW RDGTLKSKLI VCNRVGSYYA KKNPSKEDDS 120 VETIGRITSV LNVGCKARIR LFCLNGKFTV DEFTEEHNHE LLSVQEREFK KLASNLTDYH 180 KNLIVSNIRV PLKFGGSSSD LTEFVRKLNG IIWDAEIGAA DFDCRWLEIM NEHGVGKGDW 240 FEECFSIRRQ WRHNKNILDT KDRHSTPTMM ITKSKIEEYG AKVYTHKIFQ EFQEEVRCSI 300 SNCIVRGYRE EDDEQITTLK GSANDTVIDV HYNPGLPCRH ILWLCTCHAI DEIPSSLLAR 360 RWLKQEVFEI GEGVQQLQLS SARNQDGRQS EMTKLWAEIH ETVAFVQRGD LPNVIELCEN 420 LKKFREEHKS CAETVTKDQE FENLLGCKVI SEVSILPPKQ SKNKGSGKRM SSSKNVAVAV 480 ASKQKRMCKN CKQLANHDKR NCPFPFVED

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MRSLVGRVVT VGGGGRWWSS VAVVGGGQSS SLEGVYLNGI NEGALCENVE KDFMPYVGQE  60
FVSVEEAANF YNIYGIGSGF GTRKYTAKHW RDGTLKSKLI VCNRVGSYYA KKNPSKEDDS  120
VETIGRITSV LNVGCKARIR LFCLNGKFTV DEFTEEHNHE LLSVQEREFK KLASNLTDYH  180
KNLIVSNIRV PLKFGGSSSD LTEFVRKLNG IIWDAEIGAA DFDCRWLEIM NEHGVGKGDW  240
FEECFSIRRQ WRHNKNILDT KDRHSTPTMM ITKSKIEEYG AKVYTHKIFQ EFQEEVRCSI  300
SNCIVRGYRE EDDEQITTLK GSANDTVIDV HYNPGLPCRH ILWLCTCHAI DEIPSSLLAR  360
RWLKQEVFEI GEGVQQLQLS SARNQDGRQS EMTKLWAEIH ETVAFVQRGD LPNVIELCEN  420
LKKFREEHKS CAETVTKDQE FENLLGCKVI SEVSILPPKQ SKNKGSGKRM SSSKNVAVAV  480
ASKQKRMCKN CKQLANHDKR NCPFPFVED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	9e-13	FAR1 family protein