PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60359.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 157aa    MW: 17986.7 Da    PI: 6.4001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60359.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-123375754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+ +Ik+L
  Dca60359.1 33 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIRDAITHIKEL 75
                57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7392675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-132980No hitNo description
SuperFamilySSF474593.27E-173094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-143281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-163295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-103375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MIISWGLEES LSTYYDSSSP DGTVSPLGSK NIVSERNRRK KLNERLFALR AVVPNISKMD  60
KASIIRDAIT HIKELREQQQ VVKEEISNLK KYISKNKSNK SGSQSSIDNY DDQEMPFVPL  120
NPNKKKRVDD HHGEDDDDDD NHDXGWIHLQ HAPSHET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-142290266Transcription factor MYC2
5gnj_B2e-142290266Transcription factor MYC2
5gnj_E2e-142290266Transcription factor MYC2
5gnj_F2e-142290266Transcription factor MYC2
5gnj_G2e-142290266Transcription factor MYC2
5gnj_I2e-142290266Transcription factor MYC2
5gnj_M2e-142290266Transcription factor MYC2
5gnj_N2e-142290266Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765918.14e-42transcription factor bHLH35
SwissprotQ2HIV97e-32BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2J6L9F58e-41A0A2J6L9F5_LACSA; Uncharacterized protein
STRINGXP_007138769.12e-39(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-32bHLH family protein