PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60410.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 276aa    MW: 31003.5 Da    PI: 7.8398
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60410.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ ++++isw eng++fvv+++ +fak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g++ ll++i+
    Dca60410.1  10 FLMKTYELVDDKVTNDVISWGENGTTFVVWKTADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDNFKRGEQCLLSEIR 97 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Dca60410.1  98 RRKTT 102
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-55699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.89E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-36799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGQRSIPAPF LMKTYELVDD KVTNDVISWG ENGTTFVVWK TADFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANDNFKRGEQ CLLSEIRRRK TTSSHAGKPD NNQSQSVSGN  120
DVGSTSTSSP GMVVEVTDLS GENEKLRRDN EILSLELSQA KKQCDELVNF LTSQLKVGPD  180
HIHHILQQGS NTRAHNERSS TVIAVDNDDN DENKRDEGLK LFGVWLKEVD GIVKCGSKRG  240
RCGNLQVDNN NDDKKNNSNN LGVNGLDCGR KFTKTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-24210413125Heat shock factor protein 1
5d8k_B4e-2461032109Heat shock factor protein 2
5d8l_B4e-2461032109Heat shock factor protein 2
5d8l_D4e-2461032109Heat shock factor protein 2
5d8l_F4e-2461032109Heat shock factor protein 2
5d8l_H4e-2461032109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714308.11e-110heat shock factor protein HSF24-like
SwissprotP223359e-87HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0J8B4521e-104A0A0J8B452_BETVU; Uncharacterized protein
STRINGXP_010666616.11e-104(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-81heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]