PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca60449.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 257aa MW: 28133.6 Da PI: 7.8855

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca60449.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.7	3.2e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++l+q+++e+ Dca60449.1 2 SCNGCRVLRKGCSETCMLRPCIqwidtPESQGHATVFVAKFFGRAGLMSFISNVPPNQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHLCQAAVET 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l+ Dca60449.1 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.043	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCMLR PCIQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPPNQR 60 PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHLCQAAVET VLRGGTLRPI PEFLVGAPAS 120 PTTPDNSDDI STVNIFHDLN SAAAKTTVSP PRFSNSKRRR PAADLENNHN HHQHQHRQQQ 180 QLDLSLTPPS FLHTPASQRW IPAVEKQRPG TPSFDSEESA ATVSFESGLG HGHGHGIGNG 240 YHYQATEVNH KLLDLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021714438.1	1e-103	LOB domain-containing protein 38-like
Swissprot	Q9FN11	3e-78	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SZE8	1e-78	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0K9Q7W4	3e-99	A0A0K9Q7W4_SPIOL; Uncharacterized protein
STRING	XP_010679613.1	5e-92	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-78	LOB domain-containing protein 38

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]