PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60475.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 736aa    MW: 80470.3 Da    PI: 6.1878
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60475.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.2e-20590687296
                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                 +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  ++ +++++++
  Dca60475.1 590 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGIPIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SDvKCGKYMI 685
                 79*************************999999999*****7778*******99777777777777.********************..5669998887 PP

                 EE CS
          B3  95 kv 96 
                 + 
  Dca60475.1 686 RG 687
                 65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-28583701IPR015300DNA-binding pseudobarrel domain
CDDcd100154.01E-36587688No hitNo description
SuperFamilySSF1019367.06E-23588684IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.771589691IPR003340B3 DNA binding domain
SMARTSM010191.0E-20589691IPR003340B3 DNA binding domain
PfamPF023626.4E-16590686IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MKDNLCMHDE DLSGFDVFSN DQEVVVVVGK EDEEIWFETH NHHENTPTNT NNINKNSDKN  60
SINNSTNELF DMEGSDDPSS LFYAEFPPLP DFPCKSSSSS SSSNRVAAEE EEKKRVVLMN  120
STATSSSAST ASSGTASWAH DPNPMAQTGA GVALDECMDM MDNLGCLDLL ESADICWDPS  180
PLFEHENNQN HREEGGGHVI HAAAEEEDEE HVFRQFMLEN SSDAACVDIG QTSGGVHQED  240
ELAMVFFEWL KTNKETVSAE DLRNIKIKKS TIASAAKQLG GGKEGMKQLL KLILQWVQNH  300
HLHSNPNNNN TNLNTNNNAN PNPNANPEFG CMNPCPAPFA PEMVQMVPGG PTHGFAPMVG  360
GFMGGGDVYG VGGGYPPAIP SQEYQAGWAA QPMHYGMNPI PYGSFPDPGF VGYGAGYPGG  420
FYYQPGPGEG LARTGSSATK EARKKRMARQ RRIFTHHHRS SNSHVHPSNH QSNNNNNNNF  480
NLNNISHNNS SINTTVEMNG GVGNVNCGVV APNPSHANWV YWPHHQAQPM VPTPGQVNYQ  540
VPGSGHMVGQ MAPPPERAGF SGGLPRQQVG GGVEKKQGWK TEKNLKFLLQ KVLKQSDVGN  600
LGRIVLPKKE AETHLPELEA RDGIPIAMED IGTSRVWNMR YRFWPNNKSR MYLLENTGDF  660
VRSNGLQEGD FIVIYSDVKC GKYMIRGVKV RPQQGVKSET TSKSNSKPSK SQKTHGSSLQ  720
SGNGSLLASP PLNMMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-385856961112B3 domain-containing transcription factor FUS3
6j9b_D2e-385856961112B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684987.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2
TrEMBLQ7XXN61e-153Q7XXN6_FAGES; Transcription factor VP-1 homologue
STRINGXP_010684986.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-73B3 family protein