PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca60720.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 747aa MW: 86705.2 Da PI: 8.0634

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca60720.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.7e-21	46	139	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY+ YA GF+vr+ ++kk r+g+++++ +vC++eg+ +++kk +ek++r+++ +r+gCka++++ ++ +g+ +v+k+++ HnHel+ Dca60720.1 46 KFYKIYALASGFDVRRYTTKKW-RDGTVKTKLLVCNREGFWKPKKKLevnevdAEKQERRKKIKRVGCKARMRLFMM-NGVVYVDKFNEYHNHELV 139 6**************99887.8888************999899999999999999***********9.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-17	46	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-29	261	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	541	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0066	554	581	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MDNLQVIPVE GEGNQGLEEG QFCRSVEDAF TPFVGKQFED IEEAVKFYKI YALASGFDVR 60 RYTTKKWRDG TVKTKLLVCN REGFWKPKKK LEVNEVDAEK QERRKKIKRV GCKARMRLFM 120 MNGVVYVDKF NEYHNHELVS VENREFQKLA RHLSTYHKEL IVSNSRLNIG ATKTYRMLKE 180 QVNGYENIGA SLGDFKNFQT AVKCFIHERD GQLFVDHFKS MKETRTGFYF DYDIDEDGSL 240 MRAIWADGYA RKNYAVFGDA VAFDPTYSTN RYSMVFTPFT GVDNHRKSVT FAGALIAKED 300 CESFNWVFSR FLHAMDGKEP EYIITDQDPG IIESVNSIFK KARHRFCMWH IMNKVPTKFG 360 ANKADYQIFL KKLNAIIWDV NIEPEEFDMR WVETMEEHGV GVGDWFEEAF AIRKQWVMAH 420 CKDLKMGGIM RTTQRSESEN SFFKKFEHKY GTLVEFWMRF ESAMDQQRHN YKRLDNESSQ 480 LSAKLFGSTE LEKHGVSVLT DVIFKEFQKE LMSSMTTCRC VGFRVEDGYE ITSVKDAERD 540 LVVEVRYSTG TKFATCSCGL FHSWGIVCRH VIWIYAGLGF KKLPDESIPI RWRKDALDHA 600 ALTFDSMDSF KGKTIEDDQL ELSTLWAEFH QTVSVVCVHG KKSVESLCKL LKEFRLDHSN 660 NCENMSKDDE MEQLLGCKVS SEISVLPPKQ SKNKGTAKRL TSVKSKAIEV AKKPKRMCKN 720 CKQLAHHDKR NCPHPYVERL EVVEELI

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MDNLQVIPVE GEGNQGLEEG QFCRSVEDAF TPFVGKQFED IEEAVKFYKI YALASGFDVR  60
RYTTKKWRDG TVKTKLLVCN REGFWKPKKK LEVNEVDAEK QERRKKIKRV GCKARMRLFM  120
MNGVVYVDKF NEYHNHELVS VENREFQKLA RHLSTYHKEL IVSNSRLNIG ATKTYRMLKE  180
QVNGYENIGA SLGDFKNFQT AVKCFIHERD GQLFVDHFKS MKETRTGFYF DYDIDEDGSL  240
MRAIWADGYA RKNYAVFGDA VAFDPTYSTN RYSMVFTPFT GVDNHRKSVT FAGALIAKED  300
CESFNWVFSR FLHAMDGKEP EYIITDQDPG IIESVNSIFK KARHRFCMWH IMNKVPTKFG  360
ANKADYQIFL KKLNAIIWDV NIEPEEFDMR WVETMEEHGV GVGDWFEEAF AIRKQWVMAH  420
CKDLKMGGIM RTTQRSESEN SFFKKFEHKY GTLVEFWMRF ESAMDQQRHN YKRLDNESSQ  480
LSAKLFGSTE LEKHGVSVLT DVIFKEFQKE LMSSMTTCRC VGFRVEDGYE ITSVKDAERD  540
LVVEVRYSTG TKFATCSCGL FHSWGIVCRH VIWIYAGLGF KKLPDESIPI RWRKDALDHA  600
ALTFDSMDSF KGKTIEDDQL ELSTLWAEFH QTVSVVCVHG KKSVESLCKL LKEFRLDHSN  660
NCENMSKDDE MEQLLGCKVS SEISVLPPKQ SKNKGTAKRL TSVKSKAIEV AKKPKRMCKN  720
CKQLAHHDKR NCPHPYVERL EVVEELI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	105	KKKLEVNEVDAEKQERRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-73	FAR1-related sequence 5