PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca60742.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NF-YB

Protein Properties

Length: 295aa MW: 32706.4 Da PI: 4.3561

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca60742.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	133.7	5.6e-42	12	103	4	95
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +++++Pianv+rim+k++P++akis+ ak ++qe v+efi fvt+ea+d+c++e+r+ti+g+d+l+a+++l +++yvepl+ yl+kyre+eg Dca60742.1 12 EQQLVPIANVIRIMRKAVPQHAKISDGAKFSIQESVTEFIRFVTQEANDRCRKEHRRTITGEDILFAMGNLRLDNYVEPLTRYLQKYREFEG 103 56899*************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.6E-37	12	105	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-31	15	107	IPR009072	Histone-fold
Pfam	PF00808	2.0E-21	16	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.4E-14	43	61	No hit	No description
PRINTS	PR00615	2.4E-14	62	80	No hit	No description
PRINTS	PR00615	2.4E-14	81	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MPPTTTMLPV SEQQLVPIAN VIRIMRKAVP QHAKISDGAK FSIQESVTEF IRFVTQEAND 60 RCRKEHRRTI TGEDILFAMG NLRLDNYVEP LTRYLQKYRE FEGLNHPHHQ LMGFMPRAAV 120 MVPPIMSPNF SNNANMFVDA TQQQQNYFTN YEPASSSSVA NMFVNATQQQ QNYFTNYEPV 180 SSSSVANMFV NATQQQQNYF SNYEPVSSSS SCDPPPAPAP ASAAYAMPSV PAQSEGLFSS 240 LMDSINFEGG SCCTENEVEF GSIQFPAGDD AASTSGSTSA SILDDELFDL FAQFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-34	8	100	4	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	4e-37	nuclear factor Y, subunit B6