PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60996.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 275aa    MW: 30889.9 Da    PI: 9.0459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60996.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000331672001452
                 HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
         HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                 +++ +++++L+e++ +      +K + a++L++A+++I 
  Dca60996.1 167 QKLSDKIATLQEIVSPY-----GKTDTASVLQEACQFIT 200
                 6899**********999.....9*************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.937153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-5164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-7165221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRNYNFAPIS ACWQSLNSGL DEYHSTSSGD ISMMLGNNNF NGYVEDGFNC NNSDQICYGS  60
IDQFPYLSPA LHSSIISTTN ENMSIGATAN LVDYPWSSPC ETTKIDPPHV QSCKPTIKDV  120
RKSVNGAKHG QRNSITSVEA SRVSKKKKDI EQLIKAQRLK ISGRKSQKLS DKIATLQEIV  180
SPYGKTDTAS VLQEACQFIT MFHHEIRRLS ISYYEGRSLH SHLQGHQAER KGDLKSKGLC  240
LVPISIMNRL TREMCGDQQH NNVARNIRRP DFIKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021732040.11e-75transcription factor bHLH111-like isoform X1
RefseqXP_021732046.12e-75transcription factor bHLH111-like isoform X2
STRINGXP_010669841.15e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.16e-19bHLH family protein