PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca61060.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 315aa MW: 34975 Da PI: 7.557

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca61060.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.2e-09	46	95	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l + +K++Ka+iL+ +++ +++L Dca61060.1 46 RKVQKADREKLRRDRLNEQFIELGNTLDPE----RPKNDKATILTDTIQLLREL 95 5677889******************997....69***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.779	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.59E-6	46	99	No hit	No description
Pfam	PF00010	1.1E-6	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	46	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-11	46	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-6	51	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDQWLSDKVS QNVTNSVQIP NNFGRSQSTH LDSRPKAEVT DPIVVRKVQK ADREKLRRDR 60 LNEQFIELGN TLDPERPKND KATILTDTIQ LLRELTAEVN KLKAECSTLS EESRELIQEK 120 NELREEKASL KSDIESLNAQ YQQRVRVMFP WTTVEPSVVM APPYSYPLPM AMPPGPIPMH 180 PSLQPYPFFG NQNAFMPPFT NPPNPHVEQQ PAQQASASRV SSKPDSAGKA SECGNSGKAR 240 HAGRTEDSSE VATELELKTP GSARQQESSS TDKKGKHFQK KDKSTTDGSS SSKFSCPGPQ 300 ESSSNSVSQV PMPDK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010679934.1	1e-155	PREDICTED: transcription factor bHLH121
Swissprot	Q9LT23	2e-73	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A498KGZ8	1e-123	A0A498KGZ8_MALDO; Uncharacterized protein
STRING	XP_010679934.1	1e-154	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	5e-65	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]