PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61157.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 902aa    MW: 99558.2 Da    PI: 6.5458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61157.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.7e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
       Dca61157.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.0911973IPR017930Myb domain
TIGRFAMsTIGR015571.0E-162271IPR006447Myb domain, plants
SMARTSM007177.3E-132371IPR001005SANT/Myb domain
PfamPF002493.9E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-82464IPR009057Homeodomain-like
CDDcd001671.86E-92669No hitNo description
SuperFamilySSF503247.85E-67730901IPR008162Inorganic pyrophosphatase
Gene3DG3DSA:3.90.80.102.9E-67732902IPR008162Inorganic pyrophosphatase
HamapMF_0020929.741750902IPR008162Inorganic pyrophosphatase
CDDcd004122.78E-85750902IPR008162Inorganic pyrophosphatase
PfamPF007196.7E-53754901IPR008162Inorganic pyrophosphatase
PROSITE patternPS003870801807IPR008162Inorganic pyrophosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006796Biological Processphosphate-containing compound metabolic process
GO:0005737Cellular Componentcytoplasm
GO:0000287Molecular Functionmagnesium ion binding
GO:0003677Molecular FunctionDNA binding
GO:0004427Molecular Functioninorganic diphosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MDAYSSGEEL LVKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALVKG VPIEKAIDIE IPPPRPKKKP STPYPRKTGA VCSSSAQVIR  120
AKDGVQLPSC SSHSSLQMVA VVIEPQLEKH VGDNVEQKSK GTCGSEKRSE AFTLFRESPS  180
SESPASVTEE VRQFSNMEFV PVKKPLINNE KCESHVDDGP AKPDSTEIVR DDSNNKTHTA  240
KQFPRHAPVQ ILDGCQVTCS QGFSSDVSYQ EPRVQSELAV HPGLYNNAAV SCAAESQNSA  300
SRSSNHQIYP SFHASFGPLP NNQEDFNSYL QMSSNFSSLI VSALLQNPAA HAAASFAASL  360
WPTTPTVGNL PNSNPGNHGP FMPRPVHTAP SMTAIAAATV AAATAWWAAH GLLPVSAPFH  420
SGFSFPPASV PVTFGNVGQS SGANEEKEGC KFQFPDSQVH HQPGHDLAEA LQPENSASKK  480
STRLSSDSGN SADKKDIGTG PTNEEQGPSI SEQKDVSKGK TKKPVDRSSC GSNTPSGSDA  540
ETDALQKNEK VNEEPKDPDV NTYTNELNVR RFRIPGNVLD NWKEVSDEGR LAFQALFSKG  600
RLPQSFSPPP DFTNCAENHG QNPVLRSKEI SQLDLNSTAW ESTSSYQGTE ENRSIVQCNN  660
NVNNDRKPTI GISPVNLASN RTGFKPYKRC SMEARESEMA ENNVTNEETM SVTTPRRPAK  720
LNERILSSLS RRSVAAHPWH DLEIGSESPE IVNCVIEITK GSKVKYELDK KTGMIKVDRI  780
LYSSVVYPHN YGFIPRTLCD DNDPLDVLVL MQEPVLPGCF LRIKAIGLMP MIDQGEADDK  840
IIAVCADDPE YKYYNNIKEL PPHRLAEIRR FFEDYKKNEN KEVAVNDFLP KEAAYEAIQH  900
SM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ls0_A1e-1027339021170Soluble inorganic pyrophosphatase 1
5ls0_B1e-1027339021170Soluble inorganic pyrophosphatase 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748820.10.0protein LHY-like isoform X1
RefseqXP_021748821.10.0protein LHY-like isoform X1
TrEMBLQ6UEI80.0Q6UEI8_MESCR; Circadian clock associated1
STRINGXP_010687317.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-100MYB_related family protein