PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca61174.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 335aa MW: 38299.6 Da PI: 5.6523

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca61174.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	56	103	15	32
HHHHHHHHHHCTSCCC................................ CS HLH 15 riNsafeeLrellPkas..............................k 32 +iN++fe Lr+ +P+ s + Dca61174.1 56 EINDKFESLRKAMPWYSvnqlstiteattlffknewhfksspilvvlS 103 69*************644655555555555555555555555555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14577	1.1E-47	133	300	IPR027944	Sieve element occlusion, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MYQVDDLEIL RSKYLLLLIS GLNIAEEDIL KLTHSISYSK PYEIVWIPVV DSSSPEINDK 60 FESLRKAMPW YSVNQLSTIT EATTLFFKNE WHFKSSPILV VLSPEGEILN KNAIHMVRIW 120 QNLPVDNLTS EVEAKLWENE TWNLKLLVNA IDPTIQEWIR DEKYIFLYGG SNVNWIRKFT 180 KQTVSAASAL QVEIKMVNMG LNYNKDHVQR VNDTIITENL THCLSESTKN FFWSRVNSMI 240 YSKLKLGTTN DGSGDTLFQE ILKFHNHKEW ALLAKGFKIL VHGPGQLAST ALDEIQVWKE 300 RGFGGPEPNT ESSEASMSAE TTRPSSSRYG SLGYE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694662.1	9e-92	PREDICTED: protein SIEVE ELEMENT OCCLUSION B
STRING	XP_010694662.1	3e-91	(Beta vulgaris)