PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca61222.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 734aa MW: 85323.4 Da PI: 8.0066

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca61222.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.3	9.3e-17	30	123	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY YA +GF++r s++++ r+g+ +++ vCs egk +++kk+ e +r++++ +gC+a++k+k +g ++++++++HnHel+ Dca61222.1 30 SFYGIYAVAIGFDIRLSTQHRW-RDGTLMDKLIVCSGEGKYTPRKKTesmnnsVEIVERKTNVRAIGCRARIKLKCI-KGILKIDQFVEKHNHELV 123 59*************99998.8888**************99887775555566888999*******9.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-12	30	123	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.0E-28	245	337	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.545	527	563	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0012	538	565	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.8E-4	539	558	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MNEGILCETV EEDFNPYVGL EFVSVEEAAS FYGIYAVAIG FDIRLSTQHR WRDGTLMDKL 60 IVCSGEGKYT PRKKTESMNN SVEIVERKTN VRAIGCRARI KLKCIKGILK IDQFVEKHNH 120 ELVSVENREF QKLCTCLTDY HKSFIMSNIK LNIGATKTYR MLKEHLNGFQ NIGATLNHFK 180 NFQRDIKCFI HDRDGQLFID RLKSMEENCP GFFFDYDVDE EGCLRRAIWA DRIAIRNYEL 240 FGDAVTFDPT YSTNKYSMVF TPFTGVDNHM KSVTFCGALI AKEDFESFNW VFGRFLTAMG 300 GKEPYYIITD QDPGIIKSVS HIFRRSRHRF CTWHIMNKVA VKYGATNNDY REFLYKLNSI 360 VWDKEIEEAE FDIRWKEIMN EHGVGEGDWF EDCFSIRKQW VQAHCRDLTM GALLRTTQRS 420 ESTNSFFKKF EHKSGTLVEF WLRFESAMEQ QRHIKKKSDN DDQHSTPKCK THLKIEEYAS 480 KVYTHQVFKD VQEEIILSVG NCRCTGYKEV NEEQISSVED AVRGRVFDVH YHPGTFNVRC 540 SCRLYERLGI LCRHIIWIYT GHAVEEIPKM FVSRRWMKDS VCDVGESMKG LCWSGKGDGR 600 QAEMTKLWTE INETVAFLES GDLETVKQMC ESLRKFREDH KSSKVKVTKE QEFEKLLGCK 660 VSSEISIMPP KKSKNKGSGK RMLSTKSVAV AESSKAKRLC KNCKQMAHHD KRNCPNPFVE 720 RASIRSESAD EHEE

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MNEGILCETV EEDFNPYVGL EFVSVEEAAS FYGIYAVAIG FDIRLSTQHR WRDGTLMDKL  60
IVCSGEGKYT PRKKTESMNN SVEIVERKTN VRAIGCRARI KLKCIKGILK IDQFVEKHNH  120
ELVSVENREF QKLCTCLTDY HKSFIMSNIK LNIGATKTYR MLKEHLNGFQ NIGATLNHFK  180
NFQRDIKCFI HDRDGQLFID RLKSMEENCP GFFFDYDVDE EGCLRRAIWA DRIAIRNYEL  240
FGDAVTFDPT YSTNKYSMVF TPFTGVDNHM KSVTFCGALI AKEDFESFNW VFGRFLTAMG  300
GKEPYYIITD QDPGIIKSVS HIFRRSRHRF CTWHIMNKVA VKYGATNNDY REFLYKLNSI  360
VWDKEIEEAE FDIRWKEIMN EHGVGEGDWF EDCFSIRKQW VQAHCRDLTM GALLRTTQRS  420
ESTNSFFKKF EHKSGTLVEF WLRFESAMEQ QRHIKKKSDN DDQHSTPKCK THLKIEEYAS  480
KVYTHQVFKD VQEEIILSVG NCRCTGYKEV NEEQISSVED AVRGRVFDVH YHPGTFNVRC  540
SCRLYERLGI LCRHIIWIYT GHAVEEIPKM FVSRRWMKDS VCDVGESMKG LCWSGKGDGR  600
QAEMTKLWTE INETVAFLES GDLETVKQMC ESLRKFREDH KSSKVKVTKE QEFEKLLGCK  660
VSSEISIMPP KKSKNKGSGK RMLSTKSVAV AESSKAKRLC KNCKQMAHHD KRNCPNPFVE  720
RASIRSESAD EHEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-78	FAR1-related sequence 5