PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca6149.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 445aa    MW: 50122.4 Da    PI: 4.5532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca6149.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-14212256655
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 e+Er+RR+++N+++  Lr+l+P+ +      Kl+Ka+iL  A+ YI +Lq
  Dca6149.1 212 LEAERKRRKKLNERLYILRSLVPNiS------KLDKASILGDAITYIEDLQ 256
                589*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.653206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.07E-14208260No hitNo description
SuperFamilySSF474591.7E-17210269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11211256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15213268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEILISNQPR WLNFSSNVSD LNVSEDSLGT KVLIPIPGGL VSEDLNVIDY VMAQCRVLVE  60
QGQMSDSVNN SHSFSMNMNM ITELQSDAPI SDINNDQSQA ALLTPVSAFE TLNISDSTNN  120
NNQSMSFLQH FSYENSAAAN SRNEFDELMQ NNGSNNVSVM DQSENGVHQT QDKQKGYAGR  180
GGDSFSDSDQ LDDDDEPKYR RRSAKGPQSK NLEAERKRRK KLNERLYILR SLVPNISKLD  240
KASILGDAIT YIEDLQKEAR DLQDELERNS DDEYTAHSIM TDHHQLHHKS FSAEASNVNE  300
PIFRPEYDLE KPTASLDKAQ QMEVQVEVGQ LEANEFYVKV FGEQKRGGFV KLMEALNCVG  360
LEIINVNMTS CISLVSYVFI VKKRDSENVP AEYLRDSLLE ATRSGQTGFW SEMAQSSETS  420
TGVEHRHQQG PSYRRVFPQP FSPVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14211256954Transcription factor MYC2
5gnj_B6e-14211256954Transcription factor MYC2
5gnj_E6e-14211256954Transcription factor MYC2
5gnj_F6e-14211256954Transcription factor MYC2
5gnj_G6e-14211256954Transcription factor MYC2
5gnj_I6e-14211256954Transcription factor MYC2
5gnj_M6e-14211256954Transcription factor MYC2
5gnj_N6e-14211256954Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199220RRRSAKGPQSKNLEAERKRRKK
2214221ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690347.11e-146PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
TrEMBLA0A0K9Q6S81e-104A0A0K9Q6S8_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010690347.11e-145(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-59bHLH family protein