PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca61547.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 296aa MW: 32943.2 Da PI: 6.1769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca61547.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.8e-09	140	187	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k + +L + ++++++Lq Dca61547.1 140 SHSLAERARREKINARMKLLQELVPGC----NKISGTSLVLDEIINHVQYLQ 187 8*************************9....788889999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.86E-9	134	191	No hit	No description
SuperFamily	SSF47459	4.06E-15	134	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-14	136	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.087	136	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-6	140	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-6	142	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MESGVESGNY FTTLLELPPN QALELLTDDA PLIGGSACCS HALSSCELPA FPSNSALVAR 60 AARYSVLADP GNAKREVKLE PVDSGLDPDR SESDKSVKRK EREKKGKSSN KKTKTTPILE 120 DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCNKIS GTSLVLDEII 180 NHVQYLQRQV EYLSMRLAAV NPRIDFNFDS LISAGSESTM DCNFPNMGMP VMWPEFQING 240 ERPQFPQQWH FESVTQPVWV KEENHSNLIT SENSLLSYDS PANSASLHSS QLKMEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672733.1	1e-135	PREDICTED: transcription factor bHLH48
Swissprot	Q8VZ02	2e-72	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A0K9QKV5	1e-124	A0A0K9QKV5_SPIOL; Uncharacterized protein
STRING	XP_010672733.1	1e-134	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	5e-78	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]