PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca61559.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 348aa MW: 40322.3 Da PI: 4.8782

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca61559.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23	2.5e-07	93	189	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 f +YA++ GF++++++++ + e++++ +++g +e++ +e++++ ++ t+Ck + + k +++ e+t ++leHnH Dca61559.1 93 FVYTYAYKSGFEISIRTNNVK---PEFKEKGISRNCSGDKEPQFFMmnrirfvctkaDEEKQKADDSEFTDCKVVIDARFLKgKSHMEITICRLEHNHV 188 5579*********998887...33444444445555555544445578889988778888999999******999989************7 PP FAR1 89 l 89 + Dca61559.1 189 I 189 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-5	93	190	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MSLNFEDYFD LNEKWDGDGG DDDDEVNEEH CQDTLVNEEN SENIQITEPT EVIRPNVVQE 60 AVALFDNNVG CDTEIIRPEV GMTFPSGEEF AAFVYTYAYK SGFEISIRTN NVKPEFKEKG 120 ISRNCSGDKE PQFFMMNRIR FVCTKADEEK QKADDSEFTD CKVVIDARFL KGKSHMEITI 180 CRLEHNHVIH PENRRFLLSY RHVSDYFKRR ALINDAAGIS IIKSFNSMVL EAGGHENLPF 240 NSRDLRNAVN LERRRSRLCG DAVAMVQYFE KMKLDNSDFF YAIERDIDGR LLNVFWADAR 300 CRSLFKSFSE VVSYDSTFGS NRFAMPFTPF VMPLAHIAKR AEKSWFMY

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MSLNFEDYFD LNEKWDGDGG DDDDEVNEEH CQDTLVNEEN SENIQITEPT EVIRPNVVQE  60
AVALFDNNVG CDTEIIRPEV GMTFPSGEEF AAFVYTYAYK SGFEISIRTN NVKPEFKEKG  120
ISRNCSGDKE PQFFMMNRIR FVCTKADEEK QKADDSEFTD CKVVIDARFL KGKSHMEITI  180
CRLEHNHVIH PENRRFLLSY RHVSDYFKRR ALINDAAGIS IIKSFNSMVL EAGGHENLPF  240
NSRDLRNAVN LERRRSRLCG DAVAMVQYFE KMKLDNSDFF YAIERDIDGR LLNVFWADAR  300
CRSLFKSFSE VVSYDSTFGS NRFAMPFTPF VMPLAHIAKR AEKSWFMY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-23	FAR1-related sequence 5