PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61632.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 219aa    MW: 23863.2 Da    PI: 10.6095
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61632.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.68.4e-0856118160
        FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrt 60 
                 +fY++YA  +GF+ r +++++      n+e+  r   C++ g + e+k+k ++  +t++et++
  Dca61632.1  56 DFYKDYAAACGFTSRLATTRRPsgrASNNEFLFRMVLCNRAGVKPENKRKLSDLVETSVETKV 118
                 6***************99998777778999*****************9994444444444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-556115IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSSSTNAATA FSTNEVNSTP NQLISANNLS LYIPTCPDEK KPKIGQIFDT LKEGEDFYKD  60
YAAACGFTSR LATTRRPSGR ASNNEFLFRM VLCNRAGVKP ENKRKLSDLV ETSVETKVSS  120
ETRASPPTFF SVVLLSSFVR RPSPSFFSSP SSLLRPSSAT SPPSAGVLLS PHLLAVSLAR  180
LASSILRSFR LWSSSGRCFD CRSSSLFGRL PRITLMQSS