PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61716.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 315aa    MW: 35193.6 Da    PI: 4.8982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61716.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12151194755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   Er+RR+ri +++ +Lr+++Pk      +Kl  a++L  Av+YI +Lq
  Dca61716.1 151 LTERNRRKRISDGILTLRSIVPKI-----TKLQNAATLSDAVDYIVELQ 194
                 57*********************7.....7***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-14136205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-10142198No hitNo description
PROSITE profilePS5088813.484144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-11150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MQVLYTRQLL NHVKHLLNYL PICPLIPADD SKLSNEEFKG TRVLIPVLGG LVELFSTEYV  60
SEDESIIQYV QCQCNGSETE TLSNSTITSD GPFYPLLEKT LDTLLSSITQ FNISPDSTPG  120
SVSQATPFTV KEESEGSQKV TKKHCKSKNL LTERNRRKRI SDGILTLRSI VPKITKLQNA  180
ATLSDAVDYI VELQNEQRKL LDELENSDEY SSDFEPTSFK TSNQEHSTFS PTKSSLSQAQ  240
VEVNQIGAGN YLLRVESQQS RGVITRLLEA VGSLDVAVVD VNATVCNGRM SSNIIVQTKN  300
EEVQEKDLRE HLMRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842759.19e-73transcription factor bHLH90
TrEMBLA0A0K9RVS12e-71A0A0K9RVS1_SPIOL; Uncharacterized protein
STRINGXP_010682551.12e-66(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.14e-25bHLH family protein