PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61744.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARR-B
Protein Properties Length: 604aa    MW: 66447.7 Da    PI: 5.6863
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61744.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-27200253155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kprl W+ +LH++Fv+av+ L G ekA Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Dca61744.1 200 KPRLFWSVDLHQKFVDAVNAL-GVEKAFPKKILDLMNVEGLTREKVASHLQKYRL 253
                 79*******************.********************************8 PP
2Response_reg82.41.5e-27191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + ++l+  +l+k +y +v+++  +++al++lke++  +D+++ D+emp+mdG++ll+     e+++p+i+++a+++ + + + ++ Ga 
    Dca61744.1  19 VLLVDDDSTCLKLMDHLLRKCQY-IVTTTNRAKDALRILKERRkrFDIVISDVEMPDMDGIKLLQLVGL-EMNIPVIMLSAYSDTKRVMQGIRNGAC 113
                   89*********************.***************988888*******************87755.569************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+ ++el +
    Dca61744.1 114 DYLVKPVRIQELQN 127
                   ***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1331566IPR017053Response regulator B-type, plant
SuperFamilySSF521721.2E-3416137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-4116140No hitNo description
SMARTSM004485.6E-3117129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.88618133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-2419127IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.87E-2920132No hitNo description
SuperFamilySSF466896.99E-18197257IPR009057Homeodomain-like
PROSITE profilePS5129410.609197256IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-28197258IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-22200253IPR006447Myb domain, plants
PfamPF002493.8E-6205252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MKQEEDSTSK LRFPAGMRVL LVDDDSTCLK LMDHLLRKCQ YIVTTTNRAK DALRILKERR  60
KRFDIVISDV EMPDMDGIKL LQLVGLEMNI PVIMLSAYSD TKRVMQGIRN GACDYLVKPV  120
RIQELQNIWQ HVVRRNKTIT LRKPTPSSLE EVERRHILNN VKAEPLNSKS PEENSSRSDD  180
DNDEQDDGSH ENEEITTQKK PRLFWSVDLH QKFVDAVNAL GVEKAFPKKI LDLMNVEGLT  240
REKVASHLQK YRLYLRKVEN ESNQPASKIS AYEDGHIGPL GGGYGVSRSL AGASGRFPGI  300
NPSLCHPTMF GRLNTAAGLS IQGLAASPML QASQLPNPST SFPSFGNFEP VTPSPNTSAP  360
VLQGLPSLNQ NRASFLPPKH SSAMSKQDIS EFGNQSANIR ALDSTSGSGT NLTDPSKCQF  420
KWGSPGESSI NPFTTMSGDS IALMQNVQND PLDYLCGLPS VDSLKGNLQN QECVNGNYLR  480
HSQIWQEERP DYMLGSCNTT GVSSSLTSIV APPNPTLGQT TTSIFSQLEG ASSHILQQNV  540
VQQPNAEPSM KFDDFLVDEP KLTGGPSGNG SSEYLEDIVG RFLKQGNGET AQTGDDFDLD  600
SFSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-23196258163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687814.10.0PREDICTED: two-component response regulator ARR12
TrEMBLA0A0K9QUN40.0A0A0K9QUN4_SPIOL; Two-component response regulator
STRINGXP_010687814.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.15e-93response regulator 12