PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61854.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24265.5 Da    PI: 8.3059
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61854.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.2e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs+ gklye+ss
  Dca61854.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNPGKLYEFSS 59
                79***********************************************96 PP
2K-box15.47.6e-07851121239
       K-box  12 akaeslqqelakLkkeienLqreqRhll 39 
                 ++++  +qe+ kLk+++e Lq++q hll
  Dca61854.1  85 NNSQANYQEYLKLKARVEVLQQSQSHLL 112
                 5678999******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.193161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-33278IPR002100Transcription factor, MADS-box
CDDcd002651.16E-42278No hitNo description
PRINTSPR004043.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN PGKLYEFSSN  60
SSMLKTIEKY QRCSYGALET TDILNNSQAN YQEYLKLKAR VEVLQQSQSH LLDQLRDLQK  120
REQALTENNR NLIKELEESN NNHQYSTRLA WESQEQQIIP IQSEAFFQPL CCNQQPSQIS  180
YQHPLSPSEV DIAATSQQIA RFNIHGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-20184185MEF2 CHIMERA
6byy_B4e-20184185MEF2 CHIMERA
6byy_C4e-20184185MEF2 CHIMERA
6byy_D4e-20184185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678363.15e-88PREDICTED: MADS-box protein CMB1
SwissprotQ7Y0401e-75EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A0J8CB491e-86A0A0J8CB49_BETVU; Uncharacterized protein
STRINGXP_010678363.12e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.15e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]